Analysis of Whole Mitogenomes from Ancient Samples View Full Text


Ontology type: schema:Chapter      Open Access: True


Chapter Info

DATE

2015

AUTHORS

Gloria Gonzales Fortes , Johanna L. A. Paijmans

ABSTRACT

Ancient mitochondrial DNA has been used in a wide variety of paleontological and archeological studies, ranging from population dynamics of extinct species to patterns of domestication. Most of these studies have traditionally been based on the analysis of short fragments from the mitochondrial control region, analyzed using PCR coupled with Sanger sequencing. With the introduction of high-throughput sequencing, as well as new enrichment technologies, the recovery of full mitochondrial genomes (mitogenomes) from ancient specimens has become significantly less complicated. Here we present a protocol to build ancient extracts into Illumina high-throughput sequencing libraries, and subsequent Agilent array-based capture to enrich for the desired mitogenome. Both are based on previously published protocols, with the introduction of several improvements aimed to increase the recovery of short DNA fragments, while keeping the cost and effort requirements low. This protocol was designed for enrichment of mitochondrial DNA in ancient or other degraded samples. However, the protocols can be easily adapted for using for building libraries for shotgun-sequencing of whole genomes, or enrichment of other genomic regions. More... »

PAGES

179-195

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-1-4939-2990-0_13

DOI

http://dx.doi.org/10.1007/978-1-4939-2990-0_13

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1027131915

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/26374318


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