Microbiological Controls on Geochemical Kinetics 1: Fundamentals and Case Study on Microbial Fe(III) Oxide Reduction View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2008

AUTHORS

Eric E. Roden

ABSTRACT

The pervasive influence of microorganisms (abbreviated hereafter as “morgs”; see Table 8.1 for a list of abbreviations) on the geochemistry of low-temperature environments is well-recognized and has been the subject of voluminous experimental and observational research (Banfield and Nealson, 1997; Brezonik, 1994; Canfield et al., 2005; Chapelle, 2001; Ehrlich, 2002; Lovley, 2000b). Many of the foundational insights into the role of morgs as agents of geochemical reaction can be traced to basic discoveries in microbiology which took place in the 19th and early 20th centuries. Perhaps the most important contribution of all was Louis Pasteur’s definitive demonstration that decomposition of OM does not proceed in the absence of living morgs (Pasteur, 1860). Though not made in the context of geochemistry, his decisive defeat of the theory of spontaneous generation was a key step toward recognizing the role of microbial life as a direct agent of chemical transformation in natural, medical, and industrial settings. A long series of discoveries followed in which the participation of morgs in various aspects of elemental cycling and mineral transformation was revealed, many in the context of soil and aquatic microbiology (Clarke, 1985; Ehrlich, 2002; Gorham, 1991). These early discoveries, together with developments in the fields of general microbiology and biochemistry (e.g., as embodied in Kluyver (1957)’s synthesis of unity and diversity in microbial metabolism) laid the groundwork for our current understanding of microbial metabolism based on principles of biochemical energetics (thermodynamics) and enzymatic reaction kinetics. More... »

PAGES

335-415

Book

TITLE

Kinetics of Water-Rock Interaction

ISBN

978-0-387-73562-7
978-0-387-73563-4

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-0-387-73563-4_8

DOI

http://dx.doi.org/10.1007/978-0-387-73563-4_8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1047842811


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/04", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Earth Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0402", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Geochemistry", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Geology and Geophysics, University of Wisconsin, USA", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Department of Geology and Geophysics, University of Wisconsin, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Roden", 
        "givenName": "Eric E.", 
        "id": "sg:person.0726632041.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0726632041.16"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2008", 
    "datePublishedReg": "2008-01-01", 
    "description": "The pervasive influence of microorganisms (abbreviated hereafter as \u201cmorgs\u201d; see Table 8.1 for a list of abbreviations) on the geochemistry of low-temperature environments is well-recognized and has been the subject of voluminous experimental and observational research (Banfield and Nealson, 1997; Brezonik, 1994; Canfield et al., 2005; Chapelle, 2001; Ehrlich, 2002; Lovley, 2000b). Many of the foundational insights into the role of morgs as agents of geochemical reaction can be traced to basic discoveries in microbiology which took place in the 19th and early 20th centuries. Perhaps the most important contribution of all was Louis Pasteur\u2019s definitive demonstration that decomposition of OM does not proceed in the absence of living morgs (Pasteur, 1860). Though not made in the context of geochemistry, his decisive defeat of the theory of spontaneous generation was a key step toward recognizing the role of microbial life as a direct agent of chemical transformation in natural, medical, and industrial settings. A long series of discoveries followed in which the participation of morgs in various aspects of elemental cycling and mineral transformation was revealed, many in the context of soil and aquatic microbiology (Clarke, 1985; Ehrlich, 2002; Gorham, 1991). These early discoveries, together with developments in the fields of general microbiology and biochemistry (e.g., as embodied in Kluyver (1957)\u2019s synthesis of unity and diversity in microbial metabolism) laid the groundwork for our current understanding of microbial metabolism based on principles of biochemical energetics (thermodynamics) and enzymatic reaction kinetics.", 
    "editor": [
      {
        "familyName": "Brantley", 
        "givenName": "Susan L.", 
        "type": "Person"
      }, 
      {
        "familyName": "Kubicki", 
        "givenName": "James D.", 
        "type": "Person"
      }, 
      {
        "familyName": "White", 
        "givenName": "Art F.", 
        "type": "Person"
      }
    ], 
    "genre": "chapter", 
    "id": "sg:pub.10.1007/978-0-387-73563-4_8", 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "978-0-387-73562-7", 
        "978-0-387-73563-4"
      ], 
      "name": "Kinetics of Water-Rock Interaction", 
      "type": "Book"
    }, 
    "keywords": [
      "basic discoveries", 
      "definitive demonstration", 
      "microbial life", 
      "elemental cycling", 
      "aquatic microbiology", 
      "general microbiology", 
      "microbial metabolism", 
      "biochemical energetics", 
      "microorganisms", 
      "low temperature environment", 
      "foundational insights", 
      "role", 
      "Morg", 
      "discovery", 
      "microbiology", 
      "decomposition of OM", 
      "key step", 
      "direct agent", 
      "biochemistry", 
      "current understanding", 
      "metabolism", 
      "microbiological control", 
      "pervasive influence", 
      "environment", 
      "insights", 
      "agents", 
      "important contribution", 
      "absence", 
      "spontaneous generation", 
      "generation", 
      "step", 
      "chemical transformations", 
      "transformation", 
      "cycling", 
      "context of soil", 
      "soil", 
      "early discovery", 
      "development", 
      "groundwork", 
      "understanding", 
      "energetics", 
      "enzymatic reaction kinetics", 
      "oxide reduction", 
      "influence", 
      "research", 
      "reaction", 
      "place", 
      "century", 
      "contribution", 
      "demonstration", 
      "decomposition", 
      "OM", 
      "context", 
      "life", 
      "industrial settings", 
      "long series", 
      "series", 
      "aspects", 
      "mineral transformation", 
      "field", 
      "principles", 
      "kinetics", 
      "control", 
      "study", 
      "reduction", 
      "geochemistry", 
      "subjects", 
      "observational research", 
      "geochemical reactions", 
      "decisive defeat", 
      "defeat", 
      "theory", 
      "setting", 
      "participation", 
      "reaction kinetics", 
      "fundamentals", 
      "case study"
    ], 
    "name": "Microbiological Controls on Geochemical Kinetics 1: Fundamentals and Case Study on Microbial Fe(III) Oxide Reduction", 
    "pagination": "335-415", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1047842811"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/978-0-387-73563-4_8"
        ]
      }
    ], 
    "publisher": {
      "name": "Springer Nature", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1007/978-0-387-73563-4_8", 
      "https://app.dimensions.ai/details/publication/pub.1047842811"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2022-08-04T17:21", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/chapter/chapter_380.jsonl", 
    "type": "Chapter", 
    "url": "https://doi.org/10.1007/978-0-387-73563-4_8"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-73563-4_8'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-73563-4_8'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-73563-4_8'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-73563-4_8'


 

This table displays all metadata directly associated to this object as RDF triples.

154 TRIPLES      22 PREDICATES      104 URIs      95 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/978-0-387-73563-4_8 schema:about anzsrc-for:04
2 anzsrc-for:0402
3 anzsrc-for:06
4 anzsrc-for:0605
5 schema:author N6456664c04e749efa0f7fa0852316562
6 schema:datePublished 2008
7 schema:datePublishedReg 2008-01-01
8 schema:description The pervasive influence of microorganisms (abbreviated hereafter as “morgs”; see Table 8.1 for a list of abbreviations) on the geochemistry of low-temperature environments is well-recognized and has been the subject of voluminous experimental and observational research (Banfield and Nealson, 1997; Brezonik, 1994; Canfield et al., 2005; Chapelle, 2001; Ehrlich, 2002; Lovley, 2000b). Many of the foundational insights into the role of morgs as agents of geochemical reaction can be traced to basic discoveries in microbiology which took place in the 19th and early 20th centuries. Perhaps the most important contribution of all was Louis Pasteur’s definitive demonstration that decomposition of OM does not proceed in the absence of living morgs (Pasteur, 1860). Though not made in the context of geochemistry, his decisive defeat of the theory of spontaneous generation was a key step toward recognizing the role of microbial life as a direct agent of chemical transformation in natural, medical, and industrial settings. A long series of discoveries followed in which the participation of morgs in various aspects of elemental cycling and mineral transformation was revealed, many in the context of soil and aquatic microbiology (Clarke, 1985; Ehrlich, 2002; Gorham, 1991). These early discoveries, together with developments in the fields of general microbiology and biochemistry (e.g., as embodied in Kluyver (1957)’s synthesis of unity and diversity in microbial metabolism) laid the groundwork for our current understanding of microbial metabolism based on principles of biochemical energetics (thermodynamics) and enzymatic reaction kinetics.
9 schema:editor Nbbfaf4957c7241888d3c383e9714246e
10 schema:genre chapter
11 schema:isAccessibleForFree false
12 schema:isPartOf N1a583f2f8b30481bb0023244725f3897
13 schema:keywords Morg
14 OM
15 absence
16 agents
17 aquatic microbiology
18 aspects
19 basic discoveries
20 biochemical energetics
21 biochemistry
22 case study
23 century
24 chemical transformations
25 context
26 context of soil
27 contribution
28 control
29 current understanding
30 cycling
31 decisive defeat
32 decomposition
33 decomposition of OM
34 defeat
35 definitive demonstration
36 demonstration
37 development
38 direct agent
39 discovery
40 early discovery
41 elemental cycling
42 energetics
43 environment
44 enzymatic reaction kinetics
45 field
46 foundational insights
47 fundamentals
48 general microbiology
49 generation
50 geochemical reactions
51 geochemistry
52 groundwork
53 important contribution
54 industrial settings
55 influence
56 insights
57 key step
58 kinetics
59 life
60 long series
61 low temperature environment
62 metabolism
63 microbial life
64 microbial metabolism
65 microbiological control
66 microbiology
67 microorganisms
68 mineral transformation
69 observational research
70 oxide reduction
71 participation
72 pervasive influence
73 place
74 principles
75 reaction
76 reaction kinetics
77 reduction
78 research
79 role
80 series
81 setting
82 soil
83 spontaneous generation
84 step
85 study
86 subjects
87 theory
88 transformation
89 understanding
90 schema:name Microbiological Controls on Geochemical Kinetics 1: Fundamentals and Case Study on Microbial Fe(III) Oxide Reduction
91 schema:pagination 335-415
92 schema:productId N113185511f4341e8ae7da0eb4a99c12e
93 Ne9bef93bb4b948d8935c1661e69d2e55
94 schema:publisher N47a99e1116b7473c9ec72f7224bdd4a9
95 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047842811
96 https://doi.org/10.1007/978-0-387-73563-4_8
97 schema:sdDatePublished 2022-08-04T17:21
98 schema:sdLicense https://scigraph.springernature.com/explorer/license/
99 schema:sdPublisher Nea748a3bd1f845208fc914ee0f7f8042
100 schema:url https://doi.org/10.1007/978-0-387-73563-4_8
101 sgo:license sg:explorer/license/
102 sgo:sdDataset chapters
103 rdf:type schema:Chapter
104 N113185511f4341e8ae7da0eb4a99c12e schema:name dimensions_id
105 schema:value pub.1047842811
106 rdf:type schema:PropertyValue
107 N1a583f2f8b30481bb0023244725f3897 schema:isbn 978-0-387-73562-7
108 978-0-387-73563-4
109 schema:name Kinetics of Water-Rock Interaction
110 rdf:type schema:Book
111 N381dcc5185ca4bc098e54141ff2e374e rdf:first Naf6729c8a4964c159f7ec9580685092b
112 rdf:rest N5553a2cf9d834a009b69e397ba204e0f
113 N47a99e1116b7473c9ec72f7224bdd4a9 schema:name Springer Nature
114 rdf:type schema:Organisation
115 N5553a2cf9d834a009b69e397ba204e0f rdf:first N72d8a41a5c4a4db58252406b5679823f
116 rdf:rest rdf:nil
117 N6456664c04e749efa0f7fa0852316562 rdf:first sg:person.0726632041.16
118 rdf:rest rdf:nil
119 N72d8a41a5c4a4db58252406b5679823f schema:familyName White
120 schema:givenName Art F.
121 rdf:type schema:Person
122 Naf6729c8a4964c159f7ec9580685092b schema:familyName Kubicki
123 schema:givenName James D.
124 rdf:type schema:Person
125 Nbbfaf4957c7241888d3c383e9714246e rdf:first Nfb2158824d4f40c5bac3ff2215e3d1c8
126 rdf:rest N381dcc5185ca4bc098e54141ff2e374e
127 Ne9bef93bb4b948d8935c1661e69d2e55 schema:name doi
128 schema:value 10.1007/978-0-387-73563-4_8
129 rdf:type schema:PropertyValue
130 Nea748a3bd1f845208fc914ee0f7f8042 schema:name Springer Nature - SN SciGraph project
131 rdf:type schema:Organization
132 Nfb2158824d4f40c5bac3ff2215e3d1c8 schema:familyName Brantley
133 schema:givenName Susan L.
134 rdf:type schema:Person
135 anzsrc-for:04 schema:inDefinedTermSet anzsrc-for:
136 schema:name Earth Sciences
137 rdf:type schema:DefinedTerm
138 anzsrc-for:0402 schema:inDefinedTermSet anzsrc-for:
139 schema:name Geochemistry
140 rdf:type schema:DefinedTerm
141 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
142 schema:name Biological Sciences
143 rdf:type schema:DefinedTerm
144 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
145 schema:name Microbiology
146 rdf:type schema:DefinedTerm
147 sg:person.0726632041.16 schema:affiliation grid-institutes:None
148 schema:familyName Roden
149 schema:givenName Eric E.
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0726632041.16
151 rdf:type schema:Person
152 grid-institutes:None schema:alternateName Department of Geology and Geophysics, University of Wisconsin, USA
153 schema:name Department of Geology and Geophysics, University of Wisconsin, USA
154 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...