Knowledge Discovery for Biology with Taverna View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2007

AUTHORS

Carole Goble , Katy Wolstencroft , Antoon Goderis , Duncan Hull , Jun Zhao , Pinar Alper , Phillip Lord , Chris Wroe , Khalid Belhajjame , Daniele Turi , Robert Stevens , Tom Oinn , David De Roure

ABSTRACT

Life Science research has extended beyond in vivo and in vitro bench-bound science to incorporate in silico knowledge discovery, using resources that have been developed over time by different teams for different purposes and in different forms. The myGrid project has developed a set of software components and a workbench, Taverna, for building, running and sharing workflows that link third party bioinformatics services, such as databases, analytic tools and applications. Intelligently discovering prior services, workflow or data is aided by a Semantic Web of annotations, as is the building of the workflows themselves. Metadata associated with the workflow experiments, the provenance of the data outcomes and the record of the experimental process need to be flexible and extensible. Semantic Web metadata technologies would seem to be well-suited to building a Semantic Web of provenance. We have the potential to integrate and aggregate workflow outcomes, and reason over provenance logs to identify new experimental insights, and to build and export a Semantic Web of experiments that contributes to Knowledge Discovery for Taverna users and for the scientific community as a whole. More... »

PAGES

355-395

References to SciGraph publications

  • 2000-05. Gene Ontology: tool for the unification of biology in NATURE GENETICS
  • 2005. Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery in THE SEMANTIC WEB: RESEARCH AND APPLICATIONS
  • 2006-01. Mashups mix data into global service in NATURE
  • 2004. Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt in THE SEMANTIC WEB – ISWC 2004
  • 2005. Seven Bottlenecks to Workflow Reuse and Repurposing in THE SEMANTIC WEB – ISWC 2005
  • 2005. Bringing Semantics to Web Services: The OWL-S Approach in SEMANTIC WEB SERVICES AND WEB PROCESS COMPOSITION
  • 2006. An Identity Crisis in the Life Sciences in PROVENANCE AND ANNOTATION OF DATA
  • 2004-06. Bio-ontologies—fast and furious in NATURE BIOTECHNOLOGY
  • 2005. Pedro Ontology Services: A Framework for Rapid Ontology Markup in THE SEMANTIC WEB: RESEARCH AND APPLICATIONS
  • 2004. Using Semantic Web Technologies for Representing E-science Provenance in THE SEMANTIC WEB – ISWC 2004
  • 2003. Recording and Reasoning over Data Provenance in Web and Grid Services in ON THE MOVE TO MEANINGFUL INTERNET SYSTEMS 2003: COOPIS, DOA, AND ODBASE
  • 2004. Semantically Linking and Browsing Provenance Logs for E-science in SEMANTICS OF A NETWORKED WORLD. SEMANTICS FOR GRID DATABASES
  • 2001-05. The Semantic Web in SCIENTIFIC AMERICAN
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/978-0-387-48438-9_17

    DOI

    http://dx.doi.org/10.1007/978-0-387-48438-9_17

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1051157563


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    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-48438-9_17'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-48438-9_17'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-0-387-48438-9_17'

    RDF/XML is a standard XML format for linked data.

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    275 rdf:type schema:Organization
     




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