KNApSAcK: A Comprehensive Species-Metabolite Relationship Database View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2006

AUTHORS

Y. Shinbo , Y. Nakamura , M. Altaf-Ul-Amin , H. Asahi , K. Kurokawa , M. Arita , K. Saito , D. Ohta , D. Shibata , S. Kanaya

ABSTRACT

We prepared a database, KNApSAcK for accumulation and search of metabolite-species relationships. The power-law distribution observed in the present study is likely to be associated with research activity for finding novel metabolites from nature. In addition, it seems to be derived from searching rare metabolites from the organisms originally exhibiting power-law in the degree distribution of their metabolic networks. This suggests that the database contains chemical diversity of metabolites which occurred through evolution of species. Graph clustering is shown to be useful to extract taxonomic relationships on the basis of common metabolites. As we are continuously accumulating metabolite-species pairs in the database, we continue to advance our understanding of species-metabolite relations in taxonomic hierarchy. Furthermore, we plan to add an option for searching metabolite structures by entering partial structures, which will be helpful for metabolite research. More... »

PAGES

165-181

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/3-540-29782-0_13

DOI

http://dx.doi.org/10.1007/3-540-29782-0_13

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1046532214


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JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/3-540-29782-0_13'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/3-540-29782-0_13'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/3-540-29782-0_13'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/3-540-29782-0_13'


 

This table displays all metadata directly associated to this object as RDF triples.

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