Accuracy and Reproducibility of Protein–DNA Microarray Technology View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2006

AUTHORS

Simon Field , Irina Udalova , Jiannis Ragoussis

ABSTRACT

Microarray-based methods for understanding protein-DNA interactions have been developed in the last 6 years due to the need to introduce high-throughput technologies in this field. Protein-DNA microarrays utilise chips upon which a large number of DNA sequences may be printed or synthesised. Any DNA-binding protein may then be interrogated by applying either purified sample or cellular/nuclear extracts, subject to availability of a suitable detection system. Protein is simply added to the microarray slide surface, which is then washed and subjected to at least one further incubation with a labelled molecule which binds specifically to the protein of interest. The signal obtained is proportional to the level of DNA-binding protein bound to each DNA feature, enabling relative affinities to be calculated. Key factors for reproducible and accurate quantification of protein binding are: microarray surface chemistry; length of oligonucleotides; position of the binding site sequence; quality of the protein and antibodies; and hybridisation conditions. More... »

PAGES

87-110

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/10_2006_035

DOI

http://dx.doi.org/10.1007/10_2006_035

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1000491459

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/17290820


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