Andrea Califano

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Publications in SciGraph latest 50 shown

  • 2018-12 Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm in NATURE COMMUNICATIONS
  • 2018-12 Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer in NATURE COMMUNICATIONS
  • 2018-12 NSD2 is a conserved driver of metastatic prostate cancer progression in NATURE COMMUNICATIONS
  • 2018-10 Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma in ONCOGENE
  • 2017-12 PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens in NATURE COMMUNICATIONS
  • 2017-12 High-throughput validation of ceRNA regulatory networks in BMC GENOMICS
  • 2017-12 Erratum to: HDAC6 activity is a non-oncogene addiction hub for inflammatory breast cancers in BREAST CANCER RESEARCH
  • 2017-09 Accelerated parallel algorithm for gene network reverse engineering in BMC SYSTEMS BIOLOGY
  • 2017-04-21 A computational systems approach identifies synergistic specification genes that facilitate lineage conversion to prostate tissue in NATURE COMMUNICATIONS
  • 2017-02 The recurrent architecture of tumour initiation, progression and drug sensitivity in NATURE REVIEWS CANCER
  • 2016-12 A case study of an integrative genomic and experimental therapeutic approach for rare tumors: identification of vulnerabilities in a pediatric poorly differentiated carcinoma in GENOME MEDICINE
  • 2016-10 HAUSP deubiquitinates and stabilizes N-Myc in neuroblastoma in NATURE MEDICINE
  • 2016-08 Functional characterization of somatic mutations in cancer using network-based inference of protein activity in NATURE GENETICS
  • 2016-02 High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing in MODERN PATHOLOGY
  • 2016-01 An ID2-dependent mechanism for VHL inactivation in cancer in NATURE
  • 2015-12 Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks in GENOME BIOLOGY
  • 2015-12 HDAC6 activity is a non-oncogene addiction hub for inflammatory breast cancers in BREAST CANCER RESEARCH
  • 2015-12 Direct ChIP-Seq significance analysis improves target prediction in BMC GENOMICS
  • 2015-09 Identification of neurodegenerative factors using translatome-regulatory network analysis in NATURE NEUROSCIENCE
  • 2015-08 Toward understanding and exploiting tumor heterogeneity in NATURE MEDICINE
  • 2015-01 A Systems Approach to Drug Discovery in Alzheimer’s Disease in NEUROTHERAPEUTICS
  • 2014-12 A community effort to assess and improve drug sensitivity prediction algorithms in NATURE BIOTECHNOLOGY
  • 2014-12 A community computational challenge to predict the activity of pairs of compounds in NATURE BIOTECHNOLOGY
  • 2014-12 Gene expression changes consistent with neuroAIDS and impaired working memory in HIV-1 transgenic rats in MOLECULAR NEURODEGENERATION
  • 2014-12 Predicting protein networks in cancer in NATURE GENETICS
  • 2014-09 Toward better benchmarking: challenge-based methods assessment in cancer genomics in GENOME BIOLOGY
  • 2013-12 Hypothalamic proteoglycan syndecan-3 is a novel cocaine addiction resilience factor in NATURE COMMUNICATIONS
  • 2013-11 STK38 is a critical upstream regulator of MYC’s oncogenic activity in human B-cell lymphoma in ONCOGENE
  • 2013-10 MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma in NATURE IMMUNOLOGY
  • 2013-03 Lineage analysis of basal epithelial cells reveals their unexpected plasticity and supports a cell-of-origin model for prostate cancer heterogeneity in NATURE CELL BIOLOGY
  • 2013-03 Corrigendum: Structure-based prediction of protein–protein interactions on a genome-wide scale in NATURE
  • 2013 Pooled ShRNA Screenings: Computational Analysis in PANCREATIC CANCER
  • 2012-09-30 Structure-based prediction of protein–protein interactions on a genome-wide scale in NATURE
  • 2012-08 Leveraging models of cell regulation and GWAS data in integrative network-based association studies in NATURE GENETICS
  • 2012-03 Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL in NATURE MEDICINE
  • 2011-09 Verification of systems biology research in the age of collaborative competition in NATURE BIOTECHNOLOGY
  • 2011-08-21 Genome-Wide Dissection of Posttranscriptional and Posttranslational Interactions in GENE REGULATORY NETWORKS
  • 2011-02 Integrative Network-based Association Studies: Leveraging cell regulatory models in the post-GWAS era in NATURE PRECEDINGS
  • 2010-11 The TLX1 oncogene drives aneuploidy in T cell transformation in NATURE MEDICINE
  • 2010-01 The transcriptional network for mesenchymal transformation of brain tumours in NATURE
  • 2009-12 Correlating measurements across samples improves accuracy of large-scale expression profile experiments in GENOME BIOLOGY
  • 2009-09 Genome-wide identification of post-translational modulators of transcription factor activity in human B cells in NATURE BIOTECHNOLOGY
  • 2009-06 Mutations of multiple genes cause deregulation of NF-κB in diffuse large B-cell lymphoma in NATURE
  • 2007-12 Pattern-based mining strategy to detect multi-locus association and gene × environment interaction in BMC PROCEEDINGS
  • 2007-11 ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding in BMC BIOINFORMATICS
  • 2007 A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells in SYSTEMS BIOLOGY AND COMPUTATIONAL PROTEOMICS
  • 2006-08 Reverse engineering cellular networks in NATURE PROTOCOLS
  • 2006-03 ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context in BMC BIOINFORMATICS
  • 2006 Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2006 Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps in COMPARATIVE GENOMICS
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