Ziv Bar-Joseph

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Publications in SciGraph latest 50 shown

  • 2022-07-07 scSTEM: clustering pseudotime ordered single-cell data in GENOME BIOLOGY
  • 2022-04-29 Unsupervised Cell Functional Annotation for Single-Cell RNA-Seq in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2022-04-14 Interactive single-cell data analysis using Cellar in NATURE COMMUNICATIONS
  • 2022-04-14 Membrane marker selection for segmenting single cell spatial proteomics data in NATURE COMMUNICATIONS
  • 2022-03-07 TraSig: inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data in GENOME BIOLOGY
  • 2022-01-31 Temporal modelling using single-cell transcriptomics in NATURE REVIEWS GENETICS
  • 2021-06-20 The Epigenetic Consensus Problem in STRUCTURAL INFORMATION AND COMMUNICATION COMPLEXITY
  • 2020-12-10 GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data in GENOME BIOLOGY
  • 2020-07-21 Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid in NATURE PLANTS
  • 2020-06-16 Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data in NATURE COMMUNICATIONS
  • 2020-04-21 Supervised Adversarial Alignment of Single-Cell RNA-seq Data in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2020-03-13 Integrated multi-omics framework of the plant response to jasmonic acid in NATURE PLANTS
  • 2019-04-23 Protein interaction disruption in cancer in BMC CANCER
  • 2019-04-02 Dynamic interaction network inference from longitudinal microbiome data in MICROBIOME
  • 2018-11-13 A web server for comparative analysis of single-cell RNA-seq data in NATURE COMMUNICATIONS
  • 2017-10-10 Reconstructing cancer drug response networks using multitask learning in BMC SYSTEMS BIOLOGY
  • 2017-09-19 Probabilistic Models for Error Correction of Nonuniform Sequencing Data in ALGORITHMS FOR NEXT-GENERATION SEQUENCING DATA
  • 2016 The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression in SYSTEMS BIOLOGY OF ALZHEIMER'S DISEASE
  • 2015-10-06 Temporal transcriptional response to latency reversing agents identifies specific factors regulating HIV-1 viral transcriptional switch in RETROVIROLOGY
  • 2015-09-23 De novo ChIP-seq analysis in GENOME BIOLOGY
  • 2015-01-07 MassExodus: modeling evolving networks in harsh environments in DATA MINING AND KNOWLEDGE DISCOVERY
  • 2013-12-12 Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells in BMC SYSTEMS BIOLOGY
  • 2013-11-15 Predicting tissue specific transcription factor binding sites in BMC GENOMICS
  • 2013-09-27 ExpressionBlast: mining large, unstructured expression databases in NATURE METHODS
  • 2013-05-30 MicroRNA regulation and its effects on cellular transcriptome in Human Immunodeficiency Virus-1 (HIV-1) infected individuals with distinct viral load and CD4 cell counts in BMC INFECTIOUS DISEASES
  • 2012-08-28 Beeping a maximal independent set in DISTRIBUTED COMPUTING
  • 2012-08-16 DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data in BMC SYSTEMS BIOLOGY
  • 2012-07-18 Studying and modelling dynamic biological processes using time-series gene expression data in NATURE REVIEWS GENETICS
  • 2012-02-22 The sirtuin SIRT6 regulates lifespan in male mice in NATURE
  • 2011-08-23 Biological interaction networks are conserved at the module level in BMC SYSTEMS BIOLOGY
  • 2011 Beeping a Maximal Independent Set in DISTRIBUTED COMPUTING
  • 2011 Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2010-08-23 Computational Methods for Analyzing Dynamic Regulatory Networks in COMPUTATIONAL BIOLOGY OF TRANSCRIPTION FACTOR BINDING
  • 2010-08-17 Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes in BMC GENOMICS
  • 2010-07-23 Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering in GENOME BIOLOGY
  • 2009 Cross Species Expression Analysis of Innate Immune Response in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2008-06-27 A critical assessment of Mus musculusgene function prediction using integrated genomic evidence in GENOME BIOLOGY
  • 2008-01-23 Impact of the solvent capacity constraint on E. coli metabolism in BMC SYSTEMS BIOLOGY
  • 2008-01-01 A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2007-12-21 A mixture of feature experts approach for protein-protein interaction prediction in BMC BIOINFORMATICS
  • 2007-07-24 Combined analysis reveals a core set of cycling genes in GENOME BIOLOGY
  • 2006-04-05 STEM: a tool for the analysis of short time series gene expression data in BMC BIOINFORMATICS
  • 2006 A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2005-12-06 Combined static and dynamic analysis for determining the quality of time-series expression profiles in NATURE BIOTECHNOLOGY
  • 2003-10-12 Computational discovery of gene modules and regulatory networks in NATURE BIOTECHNOLOGY
  • 2002-10-24 Early-Delivery Dynamic Atomic Broadcast in DISTRIBUTED COMPUTING
  • 2002-10-10 K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data in ALGORITHMS IN BIOINFORMATICS
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