Martin J Aryee

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Martin J



Publications in SciGraph latest 50 shown

  • 2018-12 Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks in NATURE COMMUNICATIONS
  • 2018-11 Defining CRISPR–Cas9 genome-wide nuclease activities with CIRCLE-seq in NATURE PROTOCOLS
  • 2018-09 In vivo CRISPR editing with no detectable genome-wide off-target mutations in NATURE
  • 2018-05 Corrigendum: CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR–Cas9 nuclease off-targets in NATURE METHODS
  • 2018-04 Response to “Unexpected mutations after CRISPR–Cas9 editing in vivo” in NATURE METHODS
  • 2018-03 hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data in NATURE METHODS
  • 2017-11-08 Circularization for In vitro Reporting of Cleavage Effects (CIRCLE-seq) in PROTOCOL EXCHANGE
  • 2017-06 CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR–Cas9 nuclease off-targets in NATURE METHODS
  • 2016-12 High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis in GENOME MEDICINE
  • 2016-08 Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells in NATURE BIOTECHNOLOGY
  • 2016-05 Open-source guideseq software for analysis of GUIDE-seq data in NATURE BIOTECHNOLOGY
  • 2015-06-22 Engineered CRISPR-Cas9 nucleases with altered PAM specificities in NATURE
  • 2015-03 Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing in NATURE METHODS
  • 2015-03 GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases in NATURE BIOTECHNOLOGY
  • 2014-06 Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing in NATURE BIOTECHNOLOGY
  • 2014-03 Epigenome-wide association studies without the need for cell-type composition in NATURE METHODS
  • 2013-12 Identification of direction in gene networks from expression and methylation in BMC SYSTEMS BIOLOGY
  • 2013-02 Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis in NATURE BIOTECHNOLOGY
  • 2012-12 Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review in BMC PUBLIC HEALTH
  • 2012-10 Reversible switching between epigenetic states in honeybee behavioral subcastes in NATURE NEUROSCIENCE
  • 2012-01 Erratum: Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells in NATURE BIOTECHNOLOGY
  • 2011-12 Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences in BMC GENOMICS
  • 2011-12 Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells in NATURE BIOTECHNOLOGY
  • 2010-09 Epigenetic memory in induced pluripotent stem cells in NATURE
  • 2010-09 Comprehensive methylome map of lineage commitment from haematopoietic progenitors in NATURE
  • 2010-08 Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements in NATURE GENETICS
  • 2009-12 Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts in NATURE GENETICS
  • 2009-12 An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation) in BMC BIOINFORMATICS
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