J Gregory Caporaso

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J Gregory



Publications in SciGraph latest 50 shown

  • 2018-12 Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin in MICROBIOME
  • 2018-12 Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018 in MICROBIOME
  • 2018-12 Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16–17, 2017 in MICROBIOME
  • 2018-11 Species-level functional profiling of metagenomes and metatranscriptomes in NATURE METHODS
  • 2018-10 Qiita: rapid, web-enabled microbiome meta-analysis in NATURE METHODS
  • 2018-07 Best practices for analysing microbiomes in NATURE REVIEWS MICROBIOLOGY
  • 2018-04 Current understanding of the human microbiome in NATURE MEDICINE
  • 2017-12 Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study in MICROBIOME
  • 2017-11 A communal catalogue reveals Earth’s multiscale microbial diversity in NATURE
  • 2016-12 Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets in GIGASCIENCE
  • 2016-12 ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses in MICROBIOME
  • 2016-09 Phylogenetic organization of bacterial activity in THE ISME JOURNAL
  • 2015-12 Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity in MICROBIOME
  • 2015-12 Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity in MICROBIOME
  • 2015 Using QIIME to Evaluate the Microbial Communities Within Hydrocarbon Environments in HYDROCARBON AND LIPID MICROBIOLOGY PROTOCOLS
  • 2014-12 Temporal variability is a personalized feature of the human microbiome in GENOME BIOLOGY
  • 2014-12 Individual diet has sex-dependent effects on vertebrate gut microbiota in NATURE COMMUNICATIONS
  • 2013-09 Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences in NATURE BIOTECHNOLOGY
  • 2013-08 A meta-analysis of changes in bacterial and archaeal communities with time in THE ISME JOURNAL
  • 2013-04-15 Meeting Report: Fungal ITS Workshop (October 2012) in STANDARDS IN GENOMIC SCIENCES
  • 2013-03 Collaborative cloud-enabled tools allow rapid, reproducible biological insights in THE ISME JOURNAL
  • 2013-03 From molecules to dynamic biological communities in BIOLOGY & PHILOSOPHY
  • 2013-01 Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat in THE ISME JOURNAL
  • 2013-01 Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing in NATURE METHODS
  • 2012-12 The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome in GIGASCIENCE
  • 2012-08 Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms in THE ISME JOURNAL
  • 2012-07 Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys in THE ISME JOURNAL
  • 2012-06 The Western English Channel contains a persistent microbial seed bank in THE ISME JOURNAL
  • 2012-06 Human gut microbiome viewed across age and geography in NATURE
  • 2012-02 Defining seasonal marine microbial community dynamics in THE ISME JOURNAL
  • 2012-01 Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys in THE ISME JOURNAL
  • 2011-05 Moving pictures of the human microbiome in GENOME BIOLOGY
  • 2011-05 Examining the global distribution of dominant archaeal populations in soil in THE ISME JOURNAL
  • 2010-10 Soil bacterial and fungal communities across a pH gradient in an arable soil in THE ISME JOURNAL
  • 2010-05 QIIME allows analysis of high-throughput community sequencing data in NATURE METHODS
  • 2008-12 Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics in BMC EVOLUTIONARY BIOLOGY
  • 2008-09 Concept recognition for extracting protein interaction relations from biomedical text in GENOME BIOLOGY
  • 2007-08 PyCogent: a toolkit for making sense from sequence in GENOME BIOLOGY
  • 2005-11 Error Minimization and Coding Triplet/Binding Site Associations Are Independent Features of the Canonical Genetic Code in JOURNAL OF MOLECULAR EVOLUTION
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