Paul David Cotter

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Paul David



Publications in SciGraph latest 50 shown

  • 2021-11-17 Reporting guidelines for human microbiome research: the STORMS checklist in NATURE MEDICINE
  • 2021-10-14 Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity in MICROBIOME
  • 2021-08-09 Microbiota from young mice counteracts selective age-associated behavioral deficits in NATURE AGING
  • 2021-07-28 C-protein α-antigen modulates the lantibiotic thusin resistance in Streptococcus agalactiae in ANTONIE VAN LEEUWENHOEK
  • 2021-05-07 MAP, Johne’s disease and the microbiome; current knowledge and future considerations in ANIMAL MICROBIOME
  • 2021-02-15 Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples in NPJ SCIENCE OF FOOD
  • 2021-01-04 The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods in NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY
  • 2020-12-10 Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome in SCIENTIFIC REPORTS
  • 2020-11-19 Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms in MICROBIOME
  • 2020-11-12 Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth in NPJ BIOFILMS AND MICROBIOMES
  • 2020-09-26 Generation of Nonpolar Deletion Mutants in Listeria monocytogenes Using the “SOEing” Method in LISTERIA MONOCYTOGENES
  • 2020-08-13 Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality in NATURE FOOD
  • 2020-05-25 Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome in NATURE COMMUNICATIONS
  • 2020-05-18 Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse in MICROBIOME
  • 2020-03-13 Production of multiple bacteriocins, including the novel bacteriocin gassericin M, by Lactobacillus gasseri LM19, a strain isolated from human milk in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2020-02-28 First evidence of production of the lantibiotic nisin P in SCIENTIFIC REPORTS
  • 2019-08-23 Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice in SCIENTIFIC REPORTS
  • 2019-03-11 The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracycline in SCIENTIFIC REPORTS
  • 2019-02-12 Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial in BMC GASTROENTEROLOGY
  • 2019-01-18 Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection in MICROBIOME
  • 2018-08-20 Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX in MICROBIOME
  • 2018-08-07 The potency of the broad spectrum bacteriocin, bactofencin A, against staphylococci is highly dependent on primary structure, N-terminal charge and disulphide formation in SCIENTIFIC REPORTS
  • 2018-05-17 Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa in SCIENTIFIC REPORTS
  • 2018-04-19 Fighting biofilms with lantibiotics and other groups of bacteriocins in NPJ BIOFILMS AND MICROBIOMES
  • 2018-03-20 Species classifier choice is a key consideration when analysing low-complexity food microbiome data in MICROBIOME
  • 2017-09-23 Lack of Heterogeneity in Bacteriocin Production Across a Selection of Commercial Probiotic Products in PROBIOTICS AND ANTIMICROBIAL PROTEINS
  • 2017-06-08 Controlled functional expression of the bacteriocins pediocin PA-1 and bactofencin A in Escherichia coli in SCIENTIFIC REPORTS
  • 2017-04-27 Erratum to: The altered gut microbiota in adults with cystic fibrosis in BMC MICROBIOLOGY
  • 2017-03-09 The altered gut microbiota in adults with cystic fibrosis in BMC MICROBIOLOGY
  • 2017-02-23 Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model in SCIENTIFIC REPORTS
  • 2016-06-24 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform in BMC MICROBIOLOGY
  • 2016-06-02 The efficacy of thuricin CD, tigecycline, vancomycin, teicoplanin, rifampicin and nitazoxanide, independently and in paired combinations against Clostridium difficile biofilms and planktonic cells in GUT PATHOGENS
  • 2015-12-08 Compared to casein, bovine lactoferrin reduces plasma leptin and corticosterone and affects hypothalamic gene expression without altering weight gain or fat mass in high fat diet fed C57/BL6J mice in NUTRITION & METABOLISM
  • 2015-11-17 High-throughput DNA sequencing to survey bacterial histidine and tyrosine decarboxylases in raw milk cheeses in BMC MICROBIOLOGY
  • 2015-09-16 In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database in BMC MICROBIOLOGY
  • 2015-01-04 Bacteriocin Mining in Metagenomes in ENCYCLOPEDIA OF METAGENOMICS
  • 2014-04-11 Generation of Nonpolar Deletion Mutants in Listeria monocytogenes Using the “SOEing” Method in LISTERIA MONOCYTOGENES
  • 2014-03-08 Atypical Listeria innocua strains possess an intact LIPI-3 in BMC MICROBIOLOGY
  • 2014-02-05 A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota in BMC MICROBIOLOGY
  • 2013-10-01 Antipsychotics and the gut microbiome: olanzapine-induced metabolic dysfunction is attenuated by antibiotic administration in the rat in TRANSLATIONAL PSYCHIATRY
  • 2013-09-26 The two peptide lantibiotic lacticin 3147 acts synergistically with polymyxin to inhibit Gram negative bacteria in BMC MICROBIOLOGY
  • 2013-02-01 In vivo activity of Nisin A and Nisin V against Listeria monocytogenes in mice in BMC MICROBIOLOGY
  • 2013 Bacteriocin Mining in Metagenomes in ENCYCLOPEDIA OF METAGENOMICS
  • 2012-12-24 Bacteriocins — a viable alternative to antibiotics? in NATURE REVIEWS MICROBIOLOGY
  • 2012-04-26 Impact of leucine on energy balance in JOURNAL OF PHYSIOLOGY AND BIOCHEMISTRY
  • 2012-03-03 Comparison of the Potency of the Lipid II Targeting Antimicrobials Nisin, Lacticin 3147 and Vancomycin Against Gram-Positive Bacteria in PROBIOTICS AND ANTIMICROBIAL PROTEINS
  • 2012-01-11 Gender-dependent consequences of chronic olanzapine in the rat: effects on body weight, inflammatory, metabolic and microbiota parameters in PSYCHOPHARMACOLOGY
  • 2011-09-07 Flagging flora: help from bacteriocins? in NATURE
  • 2011-08-08 Streptolysin S-like virulence factors: the continuing sagA in NATURE REVIEWS MICROBIOLOGY
  • 2011-04-22 An International Network for Improving Health Properties of Food by Sharing our Knowledge on the Digestive Process in FOOD DIGESTION: RESEARCH AND CURRENT OPINION
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