John L Rinn

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John L



Publications in SciGraph latest 50 shown

  • 2018-12 Enhancers in the Peril lincRNA locus regulate distant but not local genes in GENOME BIOLOGY
  • 2018-12 A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus in NATURE COMMUNICATIONS
  • 2018-02 Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING) in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2018-02 Genetic determinants and epigenetic effects of pioneer-factor occupancy in NATURE GENETICS
  • 2016-12 In vivo Ebola virus infection leads to a strong innate response in circulating immune cells in BMC GENOMICS
  • 2016-12 Widespread RNA binding by chromatin-associated proteins in GENOME BIOLOGY
  • 2016-09 The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan in NATURE
  • 2016-03-24 Function and evolution of local repeats in the Firre locus in NATURE COMMUNICATIONS
  • 2016-03-15 Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer in NATURE COMMUNICATIONS
  • 2016-02-02 Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions in NATURE COMMUNICATIONS
  • 2015-12 The histone chaperone CAF-1 safeguards somatic cell identity in NATURE
  • 2015-12 Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution in GENOME BIOLOGY
  • 2015-12 Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA in BMC GENOMICS
  • 2015-11 A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs in NATURE BIOTECHNOLOGY
  • 2015-07 Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display in NATURE METHODS
  • 2015-05 Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells in NATURE GENETICS
  • 2015-02 Dissecting neural differentiation regulatory networks through epigenetic footprinting in NATURE
  • 2015-01 Discovery and annotation of long noncoding RNAs in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2015 Visualization of lncRNA by Single-Molecule Fluorescence In Situ Hybridization in NUCLEAR BODIES AND NONCODING RNAS
  • 2014-12 Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions in GENOME BIOLOGY
  • 2014-10 Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • 2014-08 Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons in NATURE NEUROSCIENCE
  • 2014-06 'Lnc'-ing enhancers to MYC regulation in CELL RESEARCH
  • 2014-04 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells in NATURE BIOTECHNOLOGY
  • 2014-02 Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2014-01 'Oming in on RNA–protein interactions in GENOME BIOLOGY
  • 2014-01 RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome in GENOME BIOLOGY
  • 2014-01 The multilayered complexity of ceRNA crosstalk and competition in NATURE
  • 2013-12 Poly-combing the genome for RNA in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2013-12 Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination in NATURE COMMUNICATIONS
  • 2013-11 DNMT1-interacting RNAs block gene-specific DNA methylation in NATURE
  • 2013-09 PintlincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2 in GENOME BIOLOGY
  • 2013-04 Sixty years of genome biology in GENOME BIOLOGY
  • 2013-01 Peptidomic discovery of short open reading frame–encoded peptides in human cells in NATURE CHEMICAL BIOLOGY
  • 2013-01 Differential analysis of gene regulation at transcript resolution with RNA-seq in NATURE BIOTECHNOLOGY
  • 2012-12-02 Control of somatic tissue differentiation by the long non-coding RNA TINCR in NATURE
  • 2012-12 Identification of proteins binding coding and non-coding human RNAs using protein microarrays in BMC GENOMICS
  • 2012-11 Transposable elements reveal a stem cell-specific class of long noncoding RNAs in GENOME BIOLOGY
  • 2012-05 A Keystone for ncRNA in GENOME BIOLOGY
  • 2012-03-01 Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • 2012-02 Modular regulatory principles of large non-coding RNAs in NATURE
  • 2012-02 Programming human pluripotent stem cells into white and brown adipocytes in NATURE CELL BIOLOGY
  • 2012-01 Targeted RNA sequencing reveals the deep complexity of the human transcriptome in NATURE BIOTECHNOLOGY
  • 2011-12 Genomics in 2011: challenges and opportunities in GENOME BIOLOGY
  • 2011-09 lincRNAs act in the circuitry controlling pluripotency and differentiation in NATURE
  • 2011-09 Improving RNA-Seq expression estimates by correcting for fragment bias in GENOME BIOLOGY
  • 2011-06 A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs in GENOME BIOLOGY
  • 2011-02 Non-coding RNAs as regulators of embryogenesis in NATURE REVIEWS GENETICS
  • 2010-12 Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells in NATURE GENETICS
  • 2010-11 Mining data from 1000 genomes to identify the causal variant in regions under positive selection in GENOME BIOLOGY
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