Simon R Harris

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Simon R



Publications in SciGraph latest 50 shown

  • 2018-12 Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer in SCIENTIFIC REPORTS
  • 2017-12 Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure in BMC GENOMICS
  • 2017-12 Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand in BMC GENOMICS
  • 2017-12 Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events in BMC GENOMICS
  • 2017-12 European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures in BMC GENOMICS
  • 2017-04 Global and regional dissemination and evolution of Burkholderia pseudomallei in NATURE MICROBIOLOGY
  • 2016-12 The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity in BMC GENOMICS
  • 2016-12 Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis in BMC GENOMICS
  • 2016-12 Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species in BMC GENOMICS
  • 2016-12 Genomic variations leading to alterations in cell morphology of Campylobacter spp in SCIENTIFIC REPORTS
  • 2016-10 Linking an unchained malady in NATURE REVIEWS MICROBIOLOGY
  • 2016-09-16 Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes in NATURE COMMUNICATIONS
  • 2016-03-21 Global phylogeography and evolutionary history of Shigella dysenteriae type 1 in NATURE MICROBIOLOGY
  • 2016-02-25 Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages in NATURE COMMUNICATIONS
  • 2016-01-25 Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host in NATURE MICROBIOLOGY
  • 2015-12 Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system in GENOME BIOLOGY
  • 2015-12 Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus in BMC GENOMICS
  • 2015-12 Circlator: automated circularization of genome assemblies using long sequencing reads in GENOME BIOLOGY
  • 2015-12 Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission in NATURE COMMUNICATIONS
  • 2015-06 Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events in NATURE GENETICS
  • 2014-12 Comparative genome analysis of Wolbachia strain wAu in BMC GENOMICS
  • 2014-12 Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone in BMC BIOLOGY
  • 2014-10 Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis in NATURE
  • 2014-03 Evolution and transmission of drug-resistant tuberculosis in a Russian population in NATURE GENETICS
  • 2014-03 Dense genomic sampling identifies highways of pneumococcal recombination in NATURE GENETICS
  • 2013-12 Playing fast and loose with mutation in NATURE REVIEWS MICROBIOLOGY
  • 2013-12 Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data in BMC INFECTIOUS DISEASES
  • 2013-12 Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA in NATURE PROTOCOLS
  • 2013-12 Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression in BMC GENOMICS
  • 2013-10 Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans in NATURE GENETICS
  • 2013-07 Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks in NATURE BIOTECHNOLOGY
  • 2013-01 Emergence and global spread of epidemic healthcare-associated Clostridium difficile in NATURE GENETICS
  • 2012-12 A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers in BMC GENOMICS
  • 2012-11 Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa in NATURE GENETICS
  • 2012-04 Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing in NATURE GENETICS
  • 2012-01 Optimal enzymes for amplifying sequencing libraries in NATURE METHODS
  • 2011-09 Evidence for several waves of global transmission in the seventh cholera pandemic in NATURE
  • 2009-12 Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain in BMC GENOMICS
  • 2009-05 Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens in GENOME BIOLOGY
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