Fabian J Theis

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Fabian J



Publications in SciGraph latest 50 shown

  • 2019-12 Single-cell RNA-seq denoising using a deep count autoencoder in NATURE COMMUNICATIONS
  • 2019-12 IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling in NATURE COMMUNICATIONS
  • 2019-01 A test metric for assessing single-cell RNA-seq batch correction in NATURE METHODS
  • 2018-12 Publisher Correction: Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway in NATURE COMMUNICATIONS
  • 2018-12 Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm in NATURE COMMUNICATIONS
  • 2018-12 Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin in SCIENTIFIC REPORTS
  • 2018-12 Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection in NPJ SYSTEMS BIOLOGY AND APPLICATIONS
  • 2018-12 SCANPY: large-scale single-cell gene expression data analysis in GENOME BIOLOGY
  • 2018-10 Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies in METABOLOMICS
  • 2018-08-24 LNA++: Linear Noise Approximation with First and Second Order Sensitivities in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2018-05 Lifetime study in mice after acute low-dose ionizing radiation: a multifactorial study with special focus on cataract risk in RADIATION AND ENVIRONMENTAL BIOPHYSICS
  • 2018-03-02 Whither systems medicine? in EXPERIMENTAL & MOLECULAR MEDICINE
  • 2018 Information Theoretic Concepts to Unravel Cell–Cell Communication in INFORMATION- AND COMMUNICATION THEORY IN MOLECULAR BIOLOGY
  • 2018 MicroRNA as an Integral Part of Cell Communication: Regularized Target Prediction and Network Prediction in INFORMATION- AND COMMUNICATION THEORY IN MOLECULAR BIOLOGY
  • 2017-12 Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems in BMC SYSTEMS BIOLOGY
  • 2017-12 Reconstructing cell cycle and disease progression using deep learning in NATURE COMMUNICATIONS
  • 2017-12 pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms in BMC BIOINFORMATICS
  • 2017-12 Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway in NATURE COMMUNICATIONS
  • 2017-12 Pulmonary microRNA profiles identify involvement of Creb1 and Sec14l3 in bronchial epithelial changes in allergic asthma in SCIENTIFIC REPORTS
  • 2017-06-08 A BaSiC tool for background and shading correction of optical microscopy images in NATURE COMMUNICATIONS
  • 2017-04 Prospective identification of hematopoietic lineage choice by deep learning in NATURE METHODS
  • 2017-02 Peptide serum markers in islet autoantibody-positive children in DIABETOLOGIA
  • 2016-12 Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints in BMC SYSTEMS BIOLOGY
  • 2016-10 Lactation is associated with altered metabolomic signatures in women with gestational diabetes in DIABETOLOGIA
  • 2016-10 Diffusion pseudotime robustly reconstructs lineage branching in NATURE METHODS
  • 2016-07-12 Software tools for single-cell tracking and quantification of cellular and molecular properties in NATURE BIOTECHNOLOGY
  • 2016-07 Interleukin-4 and interferon-γ orchestrate an epithelial polarization in the airways in MUCOSAL IMMUNOLOGY
  • 2016-07 Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios in NATURE
  • 2016-05 An adaptive scheduling scheme for calculating Bayes factors with thermodynamic integration using Simpson’s rule in STATISTICS AND COMPUTING
  • 2016-05 Epigenetic germline inheritance of diet-induced obesity and insulin resistance in NATURE GENETICS
  • 2016-04 Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns in METABOLOMICS
  • 2016-01-07 Label-free cell cycle analysis for high-throughput imaging flow cytometry in NATURE COMMUNICATIONS
  • 2016 Bayesian Model Selection Methods and Their Application to Biological ODE Systems in UNCERTAINTY IN BIOLOGY
  • 2016 Mitosis Detection in Intestinal Crypt Images with Hough Forest and Conditional Random Fields in MACHINE LEARNING IN MEDICAL IMAGING
  • 2015-12 Erratum to: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer in MOLECULAR CANCER
  • 2015-12 Gender-specific pathway differences in the human serum metabolome in METABOLOMICS
  • 2015-12 Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy in BMC SYSTEMS BIOLOGY
  • 2015-12 Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer in MOLECULAR CANCER
  • 2015-12 Multi-omic signature of body weight change: results from a population-based cohort study in BMC MEDICINE
  • 2015-10 Network plasticity of pluripotency transcription factors in embryonic stem cells in NATURE CELL BIOLOGY
  • 2015-04 Fast clonal expansion and limited neural stem cell self-renewal in the adult subependymal zone in NATURE NEUROSCIENCE
  • 2015-03 Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells in NATURE BIOTECHNOLOGY
  • 2015-03 Decoding the regulatory network of early blood development from single-cell gene expression measurements in NATURE BIOTECHNOLOGY
  • 2015 An Affine Equivariant Robust Second-Order BSS Method in LATENT VARIABLE ANALYSIS AND SIGNAL SEPARATION
  • 2015 Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse Data Using Multivariate Test Statistics in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2015-01 Erratum to: Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes in DIABETOLOGIA
  • 2014-12 MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data in BMC BIOINFORMATICS
  • 2014-12 Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes in DIABETOLOGIA
  • 2014-09 Method of conditional moments (MCM) for the Chemical Master Equation in JOURNAL OF MATHEMATICAL BIOLOGY
  • 2014-06 A strategy to find gene combinations that identify children who progress rapidly to type 1 diabetes after islet autoantibody seroconversion in ACTA DIABETOLOGICA
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