Tandy Warnow

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Publications in SciGraph latest 50 shown

  • 2018-12 Gene tree parsimony for incomplete gene trees: addressing true biological loss in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2018-12 OCTAL: Optimal Completion of gene trees in polynomial time in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2018-09-08 NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees in COMPARATIVE GENOMICS
  • 2018-05 SIESTA: enhancing searches for optimal supertrees and species trees in BMC GENOMICS
  • 2018-05 The performance of coalescent-based species tree estimation methods under models of missing data in BMC GENOMICS
  • 2017-09-15 Enhancing Searches for Optimal Trees Using SIESTA in COMPARATIVE GENOMICS
  • 2016-11 An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees in BMC BIOINFORMATICS
  • 2016-11 Scaling statistical multiple sequence alignment to large datasets in BMC GENOMICS
  • 2016-11 A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity in NPJ BIOFILMS AND MICROBIOMES
  • 2016-11 HIPPI: highly accurate protein family classification with ensembles of HMMs in BMC GENOMICS
  • 2016-08 High diversity of picornaviruses in rats from different continents revealed by deep sequencing in EMERGING MICROBES & INFECTIONS
  • 2015-12 Phylogenomic analyses data of the avian phylogenomics project in GIGASCIENCE
  • 2015-12 Ultra-large alignments using phylogeny-aware profiles in GENOME BIOLOGY
  • 2015-12 A comparative study of SVDquartets and other coalescent-based species tree estimation methods in BMC GENOMICS
  • 2015-12 Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer in BMC GENOMICS
  • 2015-12 ASTRID: Accurate Species TRees from Internode Distances in BMC GENOMICS
  • 2015 SATe-Enabled Phylogenetic Placement in ENCYCLOPEDIA OF METAGENOMICS
  • 2015 Ultra-Large Alignments Using Ensembles of Hidden Markov Models in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2014-12 Data access for the 1,000 Plants (1KP) project in GIGASCIENCE
  • 2014-10 BBCA: Improving the scalability of *BEAST using random binning in BMC GENOMICS
  • 2014-10 Disk covering methods improve phylogenomic analyses in BMC GENOMICS
  • 2014 Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé in MULTIPLE SEQUENCE ALIGNMENT METHODS
  • 2014 PASTA: Ultra-Large Multiple Sequence Alignment in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2013 Large-Scale Multiple Sequence Alignment and Phylogeny Estimation in MODELS AND ALGORITHMS FOR GENOME EVOLUTION
  • 2013 SATe-Enabled Phylogenetic Placement in ENCYCLOPEDIA OF METAGENOMICS
  • 2013 MRL and SuperFine MRL, New Supertree Methods in ENCYCLOPEDIA OF METAGENOMICS
  • 2012-12 MRL and SuperFine+MRL: new supertree methods in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2011-12 An experimental study of Quartets MaxCut and other supertree methods in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2011-12 Fast and accurate methods for phylogenomic analyses in BMC BIOINFORMATICS
  • 2011 Algorithms for MDC-Based Multi-locus Phylogeny Inference in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2010-12 A simulation study comparing supertree and combined analysis methods using SMIDGen in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2010-03 Chemical phylogenetics of histone deacetylases in NATURE CHEMICAL BIOLOGY
  • 2010 An Experimental Study of Quartets MaxCut and Other Supertree Methods in ALGORITHMS IN BIOINFORMATICS
  • 2009 A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen in ALGORITHMS IN BIOINFORMATICS
  • 2006-10 Distance-Based Genome Rearrangement Phylogeny in JOURNAL OF MOLECULAR EVOLUTION
  • 2005 Pattern Identification in Biogeography in ALGORITHMS IN BIOINFORMATICS
  • 2004 Performance of Supertree Methods on Various Data Set Decompositions in PHYLOGENETIC SUPERTREES
  • 2003-02 Analyzing the Order of Items in Manuscripts of The Canterbury Tales in LANGUAGE RESOURCES AND EVALUATION
  • 2003 Better Hill-Climbing Searches for Parsimony in ALGORITHMS IN BIOINFORMATICS
  • 2002-10-10 Sequence-Length Requirements for Phylogenetic Methods in ALGORITHMS IN BIOINFORMATICS
  • 2002-10-10 Estimating the Deviation from a Molecular Clock in ALGORITHMS IN BIOINFORMATICS
  • 2002-10-04 Approximating the Complement of the Maximum Compatible Subset of Leaves of k Trees in APPROXIMATION ALGORITHMS FOR COMBINATORIAL OPTIMIZATION
  • 2002-05 High-Performance Algorithm Engineering for Computational Phylogenetics in THE JOURNAL OF SUPERCOMPUTING
  • 2002 Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics in EXPERIMENTAL ALGORITHMICS
  • 2001-07-27 Estimating Large Distances in Phylogenetic Reconstruction in ALGORITHM ENGINEERING
  • 2001-07-17 High-Performance Algorithmic Engineering for Computationa Phylogenetics in COMPUTATIONAL SCIENCE - ICCS 2001
  • 2001 Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time in ALGORITHMS IN BIOINFORMATICS
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