Ramanathan Sowdhamini

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Publications in SciGraph latest 50 shown

  • 2019-12 Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions in BIOLOGY DIRECT
  • 2018-10-05 Evolutionary Analysis of a Few Protein Superfamilies in Ocimum tenuiflorum in THE OCIMUM GENOME
  • 2017-12 Computational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae) in SCIENTIFIC REPORTS
  • 2017-12 Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state in BIOLOGY DIRECT
  • 2017-12 Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors in BMC GENOMICS
  • 2016-12 RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information in BMC BIOINFORMATICS
  • 2016-12 Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes in BMC GENOMICS
  • 2015-12 Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties in BMC PLANT BIOLOGY
  • 2015-12 DOCKSCORE: a webserver for ranking protein-protein docked poses in BMC BIOINFORMATICS
  • 2014-12 Sequence search and analysis of gene products containing RNA recognition motifs in the human genome in BMC GENOMICS
  • 2014-12 Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages in BMC GENOMICS
  • 2014-12 ECMIS: computational approach for the identification of hotspots at protein-protein interfaces in BMC BIOINFORMATICS
  • 2013-12 Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies in BIODATA MINING
  • 2012-12 Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins in BMC RESEARCH NOTES
  • 2012-12 Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity in BMC BIOINFORMATICS
  • 2012-12 Re-visiting protein-centric two-tier classification of existing DNA-protein complexes in BMC BIOINFORMATICS
  • 2012-12 Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome in JOURNAL OF CLINICAL BIOINFORMATICS
  • 2012 Structure-Function Relationship in Olfactory Receptors in BIO-INSPIRED COMPUTING AND APPLICATIONS
  • 2011-12 Evolutionary traces decode molecular mechanism behind fast pace of myosin XI in BMC STRUCTURAL BIOLOGY
  • 2010-12 Systematic search for putative new domain families in Mycoplasma gallisepticum genome in BMC RESEARCH NOTES
  • 2010-12 PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes in BMC BIOINFORMATICS
  • 2010-10 In silico point mutation and evolutionary trace analysis applied to nicotinic acetylcholine receptors in deciphering ligand-binding surfaces in JOURNAL OF MOLECULAR MODELING
  • 2010-08 Identification of functionally diverse lipocalin proteins from sequence information using support vector machine in AMINO ACIDS
  • 2010-01 HORI: a web server to compute Higher Order Residue Interactions in protein structures in BMC BIOINFORMATICS
  • 2009-12 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach in BIODATA MINING
  • 2009-09-03 A bioinformatics protocol for rigorous structure-based sequence alignment of distantly related proteins in PROTOCOL EXCHANGE
  • 2008-12 Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families in BMC STRUCTURAL BIOLOGY
  • 2008-12 CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations in BMC STRUCTURAL BIOLOGY
  • 2008-12 PURE: A webserver for the prediction of domains in unassigned regions in proteins in BMC BIOINFORMATICS
  • 2008-12 Genome-wide survey of prokaryotic serine proteases: Analysis of distribution and domain architectures of five serine protease families in prokaryotes in BMC GENOMICS
  • 2007-12 A machine learning approach for the identification of odorant binding proteins from sequence-derived properties in BMC BIOINFORMATICS
  • 2007-12 The N-terminus and alpha-5, alpha-6 helices of the pro-apoptotic protein Bax, modulate functional interactions with the anti-apoptotic protein Bcl-xL in BMC CELL BIOLOGY
  • 2007-11-01 PURE: a web server for querying the relationship between pre-existing domains and unassigned regions in proteins in PROTOCOL EXCHANGE
  • 2007-01 Foreword in JOURNAL OF BIOSCIENCES
  • 2007-01 Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis in JOURNAL OF BIOSCIENCES
  • 2006-12 Cross genome comparisons of serine proteases in Arabidopsis and rice in BMC GENOMICS
  • 2005-12 Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors in BMC GENOMICS
  • 2005-12 Genome wide survey of G protein-coupled receptors in Tetraodon nigroviridis in BMC EVOLUTIONARY BIOLOGY
  • 2005-11 Comparative analysis of different competitive antagonists interaction with NR2A and NR2B subunits of N-methyl-D-aspartate (NMDA) ionotropic glutamate receptor in JOURNAL OF MOLECULAR MODELING
  • 2004-12 Improvement of alignment accuracy utilizing sequentially conserved motifs in BMC BIOINFORMATICS
  • 2004-12 PASS2: an automated database of protein alignments organised as structural superfamilies in BMC BIOINFORMATICS
  • 2004-12 Evolutionary trace analysis of ionotropic glutamate receptor sequences and modeling the interactions of agonists with different NMDA receptor subunits in JOURNAL OF MOLECULAR MODELING
  • 2004-02 Improvement of comparative modeling by the application of conserved motifs amongst distantly related proteins as additional restraints in JOURNAL OF MOLECULAR MODELING
  • 2003-02 Fold prediction and comparative modeling of Bdm1: a probable α/β hydrolase associated with hot water epilepsy in JOURNAL OF MOLECULAR MODELING
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