Todd J Treangen


Ontology type: schema:Person     


Person Info

NAME

Todd J

SURNAME

Treangen

Publications in SciGraph latest 50 shown

  • 2022-11-10 De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee in NATURE COMMUNICATIONS
  • 2022-08-29 Multiple genome alignment in the telomere-to-telomere assembly era in GENOME BIOLOGY
  • 2022-06-30 Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data in NATURE METHODS
  • 2022-06-20 SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning in GENOME BIOLOGY
  • 2022-04-01 Current progress and open challenges for applying deep learning across the biosciences in NATURE COMMUNICATIONS
  • 2022-03-14 Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data in NATURE COMMUNICATIONS
  • 2021-04-28 Natural tannin extracts supplementation for COVID-19 patients (TanCOVID): a structured summary of a study protocol for a randomized controlled trial in TRIALS
  • 2021-02-26 PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment in NATURE COMMUNICATIONS
  • 2019-08-26 MetaCarvel: linking assembly graph motifs to biological variants in GENOME BIOLOGY
  • 2018-11-05 Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018 in MICROBIOME
  • 2018-10-30 RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification in GENOME BIOLOGY
  • 2016-06-20 Mash: fast genome and metagenome distance estimation using MinHash in GENOME BIOLOGY
  • 2014-11-19 The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes in GENOME BIOLOGY
  • 2014-10-14 A new rhesus macaque assembly and annotation for next-generation sequencing analyses in BIOLOGY DIRECT
  • 2014-05-03 Automated ensemble assembly and validation of microbial genomes in BMC BIOINFORMATICS
  • 2013-01-15 MetAMOS: a modular and open source metagenomic assembly and analysis pipeline in GENOME BIOLOGY
  • 2012-12-27 Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone in GENOME BIOLOGY
  • 2012-01-17 Erratum: Repetitive DNA and next-generation sequencing: computational challenges and solutions in NATURE REVIEWS GENETICS
  • 2011-11-29 Repetitive DNA and next-generation sequencing: computational challenges and solutions in NATURE REVIEWS GENETICS
  • 2011-09-19 MetAMOS: a metagenomic assembly and analysis pipeline for AMOS in GENOME BIOLOGY
  • 2011-09-19 Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences in GENOME BIOLOGY
  • 2011-09-19 Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences in GENOME BIOLOGY
  • 2011-09-19 ScaffViz: visualizing metagenome assemblies in GENOME BIOLOGY
  • 2011-09-19 MetAMOS: a metagenomic assembly and analysis pipeline for AMOS in GENOME BIOLOGY
  • 2011-09-19 ScaffViz: visualizing metagenome assemblies in GENOME BIOLOGY
  • 2011-07-27 Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences in BMC GENOMICS
  • 2011-05-31 Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths in GENOME BIOLOGY
  • 2009-01-01 Novel Computational Methods for Large Scale Genome Comparison in 2ND INTERNATIONAL WORKSHOP ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (IWPACBB 2008)
  • 2008-03-26 The impact of the neisserial DNA uptake sequences on genome evolution and stability in GENOME BIOLOGY
  • 2008-01-01 Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats in BIOINFORMATICS RESEARCH AND APPLICATIONS
  • 2007-11-01 Analyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System in COMPARATIVE GENOMICS
  • 2007 Analyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System in COMPARATIVE GENOMICS
  • 2006-10-05 M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species in BMC BIOINFORMATICS
  • 2006 Procrastination Leads to Efficient Filtration for Local Multiple Alignment in ALGORITHMS IN BIOINFORMATICS
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