Cole Trapnell

Ontology type: schema:Person     

Person Info





Publications in SciGraph latest 50 shown

  • 2022-05-13 Nuclear oligo hashing improves differential analysis of single-cell RNA-seq in NATURE COMMUNICATIONS
  • 2022-03-24 Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics in NATURE COMMUNICATIONS
  • 2022-03-14 Systematic reconstruction of cellular trajectories across mouse embryogenesis in NATURE GENETICS
  • 2021-09-27 Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation in GENOME BIOLOGY
  • 2020-07-23 Trajectory analysis quantifies transcriptional plasticity during macrophage polarization in SCIENTIFIC REPORTS
  • 2020-04-13 Sci-fate characterizes the dynamics of gene expression in single cells in NATURE BIOTECHNOLOGY
  • 2020-03-24 Dimensionality reduction by UMAP to visualize physical and genetic interactions in NATURE COMMUNICATIONS
  • 2019-10-09 The human body at cellular resolution: the NIH Human Biomolecular Atlas Program in NATURE
  • 2019-09-09 Supervised classification enables rapid annotation of cell atlases in NATURE METHODS
  • 2019-09-02 A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition in NATURE GENETICS
  • 2019-02-20 The single-cell transcriptional landscape of mammalian organogenesis in NATURE
  • 2018-04-09 Highly scalable generation of DNA methylation profiles in single cells in NATURE BIOTECHNOLOGY
  • 2018-03-14 The cis-regulatory dynamics of embryonic development at single-cell resolution in NATURE
  • 2018-02-19 On the design of CRISPR-based single-cell molecular screens in NATURE METHODS
  • 2017-08-21 Reversed graph embedding resolves complex single-cell trajectories in NATURE METHODS
  • 2017-01-23 Single-cell mRNA quantification and differential analysis with Census in NATURE METHODS
  • 2014-10-01 Pulmonary macrophage transplantation therapy in NATURE
  • 2014-09-25 Erratum: Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • 2014-06-09 Erratum: The anatomy of successful computational biology software in NATURE BIOTECHNOLOGY
  • 2014-03-23 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells in NATURE BIOTECHNOLOGY
  • 2014-01-26 Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2014-01-07 RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome in GENOME BIOLOGY
  • 2013-10-08 The anatomy of successful computational biology software in NATURE BIOTECHNOLOGY
  • 2013-04-25 TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions in GENOME BIOLOGY
  • 2012-12-09 Differential analysis of gene regulation at transcript resolution with RNA-seq in NATURE BIOTECHNOLOGY
  • 2012-03-01 Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • 2011-11-13 Targeted RNA sequencing reveals the deep complexity of the human transcriptome in NATURE BIOTECHNOLOGY
  • 2011-05-27 Computational methods for transcriptome annotation and quantification using RNA-seq in NATURE METHODS
  • 2011-03-16 Improving RNA-Seq expression estimates by correcting for fragment bias in GENOME BIOLOGY
  • 2010-05-02 Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation in NATURE BIOTECHNOLOGY
  • 2009-05 How to map billions of short reads onto genomes in NATURE BIOTECHNOLOGY
  • 2009-03-04 Ultrafast and memory-efficient alignment of short DNA sequences to the human genome in GENOME BIOLOGY
  • 2008-11-11 Erratum to: Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A in BMC GENOMICS
  • 2008-05-01 Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A in BMC GENOMICS
  • 2007-12-10 High-throughput sequence alignment using Graphics Processing Units in BMC BIOINFORMATICS
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