Ivo L Hofacker


Ontology type: schema:Person     


Person Info

NAME

Ivo L

SURNAME

Hofacker

Publications in SciGraph latest 50 shown

  • 2018 Comparative RNA Genomics in COMPARATIVE GENOMICS
  • 2017-12 Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells in SCIENTIFIC REPORTS
  • 2017-02 microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure in CELLULAR AND MOLECULAR LIFE SCIENCES
  • 2016-12 RNA folding with hard and soft constraints in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2016-12 Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells in SCIENTIFIC REPORTS
  • 2016-12 Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity in GENOME BIOLOGY
  • 2014-12 TSSAR: TSS annotation regime for dRNA-seq data in BMC BIOINFORMATICS
  • 2014 Concepts and Introduction to RNA Bioinformatics in RNA SEQUENCE, STRUCTURE, AND FUNCTION: COMPUTATIONAL AND BIOINFORMATIC METHODS
  • 2014 Predicting RNA Structure: Advances and Limitations in RNA FOLDING
  • 2014 Energy-Directed RNA Structure Prediction in RNA SEQUENCE, STRUCTURE, AND FUNCTION: COMPUTATIONAL AND BIOINFORMATIC METHODS
  • 2013 How to Multiply Dynamic Programming Algorithms in ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY
  • 2013 The Trouble with Long-Range Base Pairs in RNA Folding in ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY
  • 2012 RNA Folding Algorithms with G-Quadruplexes in ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY
  • 2011-12 RNA Accessibility in cubic time in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2011-12 ViennaRNA Package 2.0 in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2010-12 Evolution of metabolic networks: a computational frame-work in JOURNAL OF SYSTEMS CHEMISTRY
  • 2010-12 Bcheck: a wrapper tool for detecting RNase P RNA genes in BMC GENOMICS
  • 2010-12 Hybridization thermodynamics of NimbleGen Microarrays in BMC BIOINFORMATICS
  • 2010-04 Nematode sbRNAs: Homologs of Vertebrate Y RNAs in JOURNAL OF MOLECULAR EVOLUTION
  • 2010-01-21 Designing Optimal siRNA Based on Target Site Accessibility in RNA INTERFERENCE
  • 2009-10-30 Nucleic Acid Sequence and Structure Databases in DATA MINING TECHNIQUES FOR THE LIFE SCIENCES
  • 2008-12 Strategies for measuring evolutionary conservation of RNA secondary structures in BMC BIOINFORMATICS
  • 2008-12 RNAalifold: improved consensus structure prediction for RNA alignments in BMC BIOINFORMATICS
  • 2008-05 The impact of target site accessibility on the design of effective siRNAs in NATURE BIOTECHNOLOGY
  • 2008-04 Beyond energy minimization: approaches to the kinetic folding of RNA in MONATSHEFTE FÜR CHEMIE - CHEMICAL MONTHLY
  • 2008-02 Invertebrate 7SK snRNAs in JOURNAL OF MOLECULAR EVOLUTION
  • 2008-01 Variations on RNA folding and alignment: lessons from Benasque in JOURNAL OF MATHEMATICAL BIOLOGY
  • 2008 Visualization of Barrier Tree Sequences Revisited in VISUALIZATION IN MEDICINE AND LIFE SCIENCES
  • 2008 Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics in BIOINFORMATICS RESEARCH AND DEVELOPMENT
  • 2007-12 Detection of RNA structures in porcine EST data and related mammals in BMC GENOMICS
  • 2007-11-01 RNA Consensus Structure Prediction With RNAalifold in COMPARATIVE GENOMICS
  • 2007-10 How microRNAs choose their targets in NATURE GENETICS
  • 2007-07 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project in NATURE
  • 2007 RNA Consensus Structure Prediction With RNAalifold in COMPARATIVE GENOMICS
  • 2007 Saddles and Barrier in Landscapes of Generalized Search Operators in FOUNDATIONS OF GENETIC ALGORITHMS
  • 2006-12 The expansion of the metazoan microRNA repertoire in BMC GENOMICS
  • 2006-12 Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation in BMC BIOINFORMATICS
  • 2006-01 Partition function and base pairing probabilities of RNA heterodimers in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2006 Modeling RNA Folding in COMPLEX SYSTEMS SCIENCE IN BIOMEDICINE
  • 2005-12 Multiple sequence alignments of partially coding nucleic acid sequences in BMC BIOINFORMATICS
  • 2005-11 Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome in NATURE BIOTECHNOLOGY
  • 2005-04 Evolutionary patterns of non-coding RNAs in THEORY IN BIOSCIENCES
  • 2004 The Partition Function Variant of Sankoff’s Algorithm in COMPUTATIONAL SCIENCE - ICCS 2004
  • 2003-10 On the Evolution of Primitive Genetic Codes in ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES
  • 2000-03 Concurrent Neutral Evolution of mRNA Secondary Structures and Encoded Proteins in JOURNAL OF MOLECULAR EVOLUTION
  • 1996-12 Algorithm independent properties of RNA secondary structure predictions in EUROPEAN BIOPHYSICS JOURNAL
  • 1996-04 Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering in MONATSHEFTE FÜR CHEMIE - CHEMICAL MONTHLY
  • 1996-04 Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks in MONATSHEFTE FÜR CHEMIE - CHEMICAL MONTHLY
  • 1994-02 Fast folding and comparison of RNA secondary structures in MONATSHEFTE FÜR CHEMIE - CHEMICAL MONTHLY
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