Jan Gorodkin

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Publications in SciGraph latest 50 shown

  • 2018-12 Identification and characterization of novel conserved RNA structures in Drosophila in BMC GENOMICS
  • 2018-12 CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters in GENOME BIOLOGY
  • 2018 Comparative RNA Genomics in COMPARATIVE GENOMICS
  • 2017-12 Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots in BMC GENOMICS
  • 2017-12 Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells in SCIENTIFIC REPORTS
  • 2017-12 Associating transcription factors and conserved RNA structures with gene regulation in the human brain in SCIENTIFIC REPORTS
  • 2016-12 Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells in SCIENTIFIC REPORTS
  • 2015-12 Differential and coherent processing patterns from small RNAs in SCIENTIFIC REPORTS
  • 2015-12 Transcriptomic landscape of lncRNAs in inflammatory bowel disease in GENOME MEDICINE
  • 2014-12 Structured RNAs and synteny regions in the pig genome in BMC GENOMICS
  • 2014 RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments in RNA SEQUENCE, STRUCTURE, AND FUNCTION: COMPUTATIONAL AND BIOINFORMATIC METHODS
  • 2014 De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences in RNA SEQUENCE, STRUCTURE, AND FUNCTION: COMPUTATIONAL AND BIOINFORMATIC METHODS
  • 2013-12 Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing in SCIENTIFIC REPORTS
  • 2012-12 Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain in BMC GENOMICS
  • 2012-12 Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs in BMC SYSTEMS BIOLOGY
  • 2012-12 Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae in BMC GENOMICS
  • 2012-11 Analyses of pig genomes provide insight into porcine demography and evolution in NATURE
  • 2011-12 Fast local fragment chaining using sum-of-pair gap costs in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2010-12 A study of alternative splicing in the pig in BMC RESEARCH NOTES
  • 2010-12 Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2009-12 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides in BMC GENOMICS
  • 2007-12 Detection of RNA structures in porcine EST data and related mammals in BMC GENOMICS
  • 2007-12 EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues in BMC GENOMICS
  • 2007-06 Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags in GENOME BIOLOGY
  • 2005-12 Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing in BMC GENOMICS
  • 2005-08 Mapping and expression studies of the mir17-92 cluster on pig Chromosome 11 in MAMMALIAN GENOME
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