Mark A Ragan


Ontology type: schema:Person     


Person Info

NAME

Mark A

SURNAME

Ragan

Publications in SciGraph latest 50 shown

  • 2021-04-13 Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium in BMC BIOLOGY
  • 2020-05-24 Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions in BMC BIOLOGY
  • 2019-09-23 A genomic view of the reef-building coral Porites lutea and its microbial symbionts in NATURE MICROBIOLOGY
  • 2019-05-07 Quantitative Modelling of the Waddington Epigenetic Landscape in COMPUTATIONAL STEM CELL BIOLOGY
  • 2018-11-21 Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions in SCIENTIFIC REPORTS
  • 2018-08-23 Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis in COMMUNICATIONS BIOLOGY
  • 2018-07-17 Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis in COMMUNICATIONS BIOLOGY
  • 2018-01-10 Deciphering the nature of the coral–Chromera association in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2017-11-03 Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium in SCIENTIFIC REPORTS
  • 2017-08-09 Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence in NATURE COMMUNICATIONS
  • 2017-01-04 The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells in SCIENTIFIC REPORTS
  • 2016-11-29 Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events in BIOINFORMATICS
  • 2016-11-21 Crosstalk between sugarcane and a plant-growth promoting Burkholderia species in SCIENTIFIC REPORTS
  • 2016-10-19 Palmitoylation: a protein S-acylation with implications for breast cancer in NPJ BREAST CANCER
  • 2016-09-26 Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer in SCIENTIFIC REPORTS
  • 2016-07-25 A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF in SCIENTIFIC REPORTS
  • 2016-07-25 Exploring lateral genetic transfer among microbial genomes using TF-IDF in SCIENTIFIC REPORTS
  • 2016-07-01 Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer in SCIENTIFIC REPORTS
  • 2016-05-18 Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database in GIGASCIENCE
  • 2016-02-18 Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks in NPJ SYSTEMS BIOLOGY AND APPLICATIONS
  • 2015-10-01 Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer in BIOLOGY DIRECT
  • 2015-03-02 Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere in SCIENTIFIC REPORTS
  • 2014-12-08 Complex-based analysis of dysregulated cellular processes in cancer in BMC SYSTEMS BIOLOGY
  • 2014-09-30 Inferring phylogenies of evolving sequences without multiple sequence alignment in SCIENTIFIC REPORTS
  • 2013-10-22 RMaNI: Regulatory Module Network Inference framework in BMC BIOINFORMATICS
  • 2013-07-26 Understanding cellular function and disease with comparative pathway analysis in GENOME MEDICINE
  • 2013-07-23 Biological Intuition in Alignment-Free Methods: Response to Posada in JOURNAL OF MOLECULAR EVOLUTION
  • 2013-07-20 Lateral Genetic Transfer and Cellular Networks in LATERAL GENE TRANSFER IN EVOLUTION
  • 2013-04-08 Clustering evolving proteins into homologous families in BMC BIOINFORMATICS
  • 2013-01-22 Next-generation phylogenomics in BIOLOGY DIRECT
  • 2012-12-10 mCOPA: analysis of heterogeneous features in cancer expression data in JOURNAL OF CLINICAL BIOINFORMATICS
  • 2012-08-07 The mammalian PYHIN gene family: Phylogeny, evolution and expression in BMC ECOLOGY AND EVOLUTION
  • 2012-05-01 Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets in GENOME MEDICINE
  • 2011-10-29 Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella in BMC GENOMICS
  • 2010-10-07 Automatic, context-specific generation of Gene Ontology slims in BMC BIOINFORMATICS
  • 2010-06 Erratum: Visualization of image data from cells to organisms in NATURE METHODS
  • 2010-03-27 Quadratic Kernelization for Convex Recoloring of Trees in ALGORITHMICA
  • 2010-03-01 Visualization of image data from cells to organisms in NATURE METHODS
  • 2009-11-16 Trees and networks before and after Darwin in BIOLOGY DIRECT
  • 2009-02-25 Protein-protein interaction as a predictor of subcellular location in BMC SYSTEMS BIOLOGY
  • 2009 Untangling Hybrid Phylogenetic Signals: Horizontal Gene Transfer and Artifacts of Phylogenetic Reconstruction in HORIZONTAL GENE TRANSFER
  • 2008-06-04 Identification of human haploinsufficient genes and their genomic proximity to segmental duplications in EUROPEAN JOURNAL OF HUMAN GENETICS
  • 2008-01-01 Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats in BIOINFORMATICS RESEARCH AND APPLICATIONS
  • 2008 Detecting Lateral Genetic Transfer in BIOINFORMATICS
  • 2007-02-14 A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution in BMC GENOMICS
  • 2007-01-01 Connected Coloring Completion for General Graphs: Algorithms and Complexity in COMPUTING AND COMBINATORICS
  • 2007-01-01 Quadratic Kernelization for Convex Recoloring of Trees in COMPUTING AND COMBINATORICS
  • 2006-09-18 Detecting recombination in evolving nucleotide sequences in BMC BIOINFORMATICS
  • 2006-05-25 The use of concept maps during knowledge elicitation in ontology development processes – the nutrigenomics use case in BMC BIOINFORMATICS
  • 2005-09 Information Integration in Molecular Bioscience in APPLIED BIOINFORMATICS
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