S Cenk Sahinalp


Ontology type: schema:Person     


Person Info

NAME

S Cenk

SURNAME

Sahinalp

Publications in SciGraph latest 50 shown

  • 2018-12 Optimal compressed representation of high throughput sequence data via light assembly in NATURE COMMUNICATIONS
  • 2018-12 Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly in NATURE COMMUNICATIONS
  • 2018-12 Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes in NATURE COMMUNICATIONS
  • 2018 Genomic Data Compression in ENCYCLOPEDIA OF BIG DATA TECHNOLOGIES
  • 2018 GTED: Graph Traversal Edit Distance in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2017-12 Correction to: ReMixT: clone-specific genomic structure estimation in cancer in GENOME BIOLOGY
  • 2017-12 ReMixT: clone-specific genomic structure estimation in cancer in GENOME BIOLOGY
  • 2016-12 Comparison of high-throughput sequencing data compression tools in NATURE METHODS
  • 2016 Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2015 Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2014-12 Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa in BMC GENOMICS
  • 2014-11 DeeZ: reference-based compression by local assembly in NATURE METHODS
  • 2014 HIT’nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2013-12 Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies in BMC GENOMICS
  • 2012 CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population in ALGORITHMS IN BIOINFORMATICS
  • 2012 Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2011-08-24 Proteome Network Emulating Models in FUNCTIONAL COHERENCE OF MOLECULAR NETWORKS IN BIOINFORMATICS
  • 2011 Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2010-12 Sparsification of RNA structure prediction including pseudoknots in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2010-12 Fast prediction of RNA-RNA interaction in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2010-08 mrsFAST: a cache-oblivious algorithm for short-read mapping in NATURE METHODS
  • 2010 Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2010 Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties in ALGORITHMS IN BIOINFORMATICS
  • 2010 Sparsification of RNA Structure Prediction Including Pseudoknots in ALGORITHMS IN BIOINFORMATICS
  • 2009-10 Personalized copy number and segmental duplication maps using next-generation sequencing in NATURE GENETICS
  • 2009 biRNA: Fast RNA-RNA Binding Sites Prediction in ALGORITHMS IN BIOINFORMATICS
  • 2009 Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2009 Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks in ALGORITHMS IN BIOINFORMATICS
  • 2009 Fast Prediction of RNA-RNA Interaction in ALGORITHMS IN BIOINFORMATICS
  • 2008 Edit Distance Under Block Operations in ENCYCLOPEDIA OF ALGORITHMS
  • 2008 The Relation between Indel Length and Functional Divergence: A Formal Study in ALGORITHMS IN BIOINFORMATICS
  • 2007-01 The intelligence in developing systems for molecular biology in GENOME BIOLOGY
  • 2006 Improved Duplication Models for Proteome Network Evolution in SYSTEMS BIOLOGY AND REGULATORY GENOMICS
  • 2006 RNA Secondary Structure Prediction Via Energy Density Minimization in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2005 RNA-RNA Interaction Prediction and Antisense RNA Target Search in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2005 Optimal Spaced Seeds for Faster Approximate String Matching in AUTOMATA, LANGUAGES AND PROGRAMMING
  • 2005 Locally Consistent Parsing and Applications to Approximate String Comparisons in DEVELOPMENTS IN LANGUAGE THEORY
  • 2004 Sublinear Methods for Detecting Periodic Trends in Data Streams in LATIN 2004: THEORETICAL INFORMATICS
  • 2004 Hardness of String Similarity Search and Other Indexing Problems in AUTOMATA, LANGUAGES AND PROGRAMMING
  • 2003 Comparing Sequences with Segment Rearrangements in FST TCS 2003: FOUNDATIONS OF SOFTWARE TECHNOLOGY AND THEORETICAL COMPUTER SCIENCE
  • 2002-03-15 Augmenting Suffix Trees, with Applications in ALGORITHMS — ESA’ 98
  • 2002 Statistical Identification of Uniformly Mutated Segments within Repeats in COMBINATORIAL PATTERN MATCHING
  • 2002 An Improved Algorithm for Sequence Comparison with Block Reversals in LATIN 2002: THEORETICAL INFORMATICS
  • 2002 Simple and Practical Sequence Nearest Neighbors with Block Operations in COMBINATORIAL PATTERN MATCHING
  • 2001-07-04 Permutation Editing and Matching via Embeddings in AUTOMATA, LANGUAGES AND PROGRAMMING
  • 2001 Biased Skip Lists for Highly Skewed Access Patterns in ALGORITHM ENGINEERING AND EXPERIMENTATION
  • 1994 On a parallel-algorithms method for string matching problems (overview) in ALGORITHMS AND COMPLEXITY
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