Bernhard O Palsson


Ontology type: schema:Person     


Person Info

NAME

Bernhard O

SURNAME

Palsson

Publications in SciGraph latest 50 shown

  • 2018-12 Escher-FBA: a web application for interactive flux balance analysis in BMC SYSTEMS BIOLOGY
  • 2018-12 Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits in NATURE COMMUNICATIONS
  • 2018-12 Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa in BMC SYSTEMS BIOLOGY
  • 2018-12 Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions in BMC SYSTEMS BIOLOGY
  • 2018-12 Systems biology as an emerging paradigm in transfusion medicine in BMC SYSTEMS BIOLOGY
  • 2018-12 Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance in SCIENTIFIC REPORTS
  • 2018-12 A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0 in BMC BIOLOGY
  • 2018-12 Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism in NATURE COMMUNICATIONS
  • 2018-02-19 Recon3D enables a three-dimensional view of gene variation in human metabolism in NATURE BIOTECHNOLOGY
  • 2017-12 Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism in SCIENTIFIC REPORTS
  • 2017-12 Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics in SCIENTIFIC REPORTS
  • 2017-12 Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression in SCIENTIFIC REPORTS
  • 2017-12 Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655 in SCIENTIFIC REPORTS
  • 2017-10-11 iML1515, a knowledgebase that computes Escherichia coli traits in NATURE BIOTECHNOLOGY
  • 2017 Metabolic Systems Biology in ENCYCLOPEDIA OF COMPLEXITY AND SYSTEMS SCIENCE
  • 2016-12 Principles of proteome allocation are revealed using proteomic data and genome-scale models in SCIENTIFIC REPORTS
  • 2016-12 Systems biology of the structural proteome in BMC SYSTEMS BIOLOGY
  • 2016-12 Evaluation of rate law approximations in bottom-up kinetic models of metabolism in BMC SYSTEMS BIOLOGY
  • 2016-12 What do cells actually want? in GENOME BIOLOGY
  • 2016-12 solveME: fast and reliable solution of nonlinear ME models in BMC BIOINFORMATICS
  • 2016-10-26 Multi-omic data integration enables discovery of hidden biological regularities in NATURE COMMUNICATIONS
  • 2016-08 Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking in NATURE BIOTECHNOLOGY
  • 2015-12 Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis in NATURE COMMUNICATIONS
  • 2015-12 SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks in BMC SYSTEMS BIOLOGY
  • 2015-12 Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations in SCIENTIFIC REPORTS
  • 2015-12 Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli in NATURE COMMUNICATIONS
  • 2015-10 A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites in METABOLOMICS
  • 2015-06 Prediction of intracellular metabolic states from extracellular metabolomic data in METABOLOMICS
  • 2015-05 Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance in SCIENTIFIC REPORTS
  • 2015-03 How to set up collaborations between academia and industrial biotech companies in NATURE BIOTECHNOLOGY
  • 2015-02 Fast Swinnex filtration (FSF): a fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media in METABOLOMICS
  • 2014-12 Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina in MICROBIAL CELL FACTORIES
  • 2014-12 Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol in NATURE COMMUNICATIONS
  • 2014-12 Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale in BMC SYSTEMS BIOLOGY
  • 2014-12 Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states in BMC BIOLOGY
  • 2014-12 Capsule deletion via a λ-Red knockout system perturbs biofilm formation and fimbriae expression in Klebsiella pneumoniae MGH 78578 in BMC RESEARCH NOTES
  • 2014-12 Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli in NATURE COMMUNICATIONS
  • 2014-05 Optimizing genome-scale network reconstructions in NATURE BIOTECHNOLOGY
  • 2014-05 Engineering synergy in biotechnology in NATURE CHEMICAL BIOLOGY
  • 2014-02 Constraint-based models predict metabolic and associated cellular functions in NATURE REVIEWS GENETICS
  • 2013-12 Antibacterial mechanisms identified through structural systems pharmacology in BMC SYSTEMS BIOLOGY
  • 2013-12 The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models in BMC SYSTEMS BIOLOGY
  • 2013-12 COBRApy: COnstraints-Based Reconstruction and Analysis for Python in BMC SYSTEMS BIOLOGY
  • 2013-12 Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks in NATURE COMMUNICATIONS
  • 2013-12 Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association in NATURE COMMUNICATIONS
  • 2013-08 Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome in NATURE BIOTECHNOLOGY
  • 2013-05 A community-driven global reconstruction of human metabolism in NATURE BIOTECHNOLOGY
  • 2013-03 Enhancement of carotenoid biosynthesis in the green microalga Dunaliella salina with light-emitting diodes and adaptive laboratory evolution in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2013 Modeling Mycobacterium tuberculosis H37Rv In Silico in SYSTEMS BIOLOGY OF TUBERCULOSIS
  • 2012-12 UPLC-UV-MSE analysis for quantification and identification of major carotenoid and chlorophyll species in algae in ANALYTICAL AND BIOANALYTICAL CHEMISTRY
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