Shibu Yooseph


Ontology type: schema:Person     


Person Info

NAME

Shibu

SURNAME

Yooseph

Publications in SciGraph latest 50 shown

  • 2018-12 Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation in MICROBIOME
  • 2018-08-23 Co-occurrence of Anaerobes in Human Chronic Wounds in MICROBIAL ECOLOGY
  • 2018-07-06 Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2018-02-06 Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2018-01-18 Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease in CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY
  • 2017-12 Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies in BMC GENOMICS
  • 2017-08-08 Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2017-01 Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico in MICROBIAL ECOLOGY
  • 2016-12 Microbial diversity in individuals and their household contacts following typical antibiotic courses in MICROBIOME
  • 2016-12 Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis in BMC GENOMICS
  • 2016-10 A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome in SCIENTIFIC REPORTS
  • 2016-08 Global biogeography of Prochlorococcus genome diversity in the surface ocean in THE ISME JOURNAL
  • 2016-08 GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly in BMC BIOINFORMATICS
  • 2015-12 Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism in THE ISME JOURNAL
  • 2015-12 Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection in BMC GENOMICS
  • 2015-07 Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics in THE ISME JOURNAL
  • 2015 Obesity and Periodontal Disease in ENCYCLOPEDIA OF METAGENOMICS
  • 2014-09 Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea in THE ISME JOURNAL
  • 2014 Bioinformatics for Genomes and Metagenomes in Ecology Studies in INFECTIOUS MICROECOLOGY
  • 2013-12 An in vitrobiofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome in MICROBIOME
  • 2013 Obesity and Periodontal Disease in ENCYCLOPEDIA OF METAGENOMICS
  • 2012-12 Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvumstrains in BMC MICROBIOLOGY
  • 2012-06 A framework for human microbiome research in NATURE
  • 2012-06 Structure, function and diversity of the healthy human microbiome in NATURE
  • 2012-06 Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage in THE ISME JOURNAL
  • 2012 From Bacterial to Microbial Ecosystems (Metagenomics) in BACTERIAL MOLECULAR NETWORKS
  • 2010-12 A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes in BMC GENOMICS
  • 2010-12 ANDES: Statistical tools for the ANalyses of DEep Sequencing in BMC RESEARCH NOTES
  • 2010-11 Genomic and functional adaptation in surface ocean planktonic prokaryotes in NATURE
  • 2010-10-19 Foregut microbiome in development of esophageal adenocarcinoma in NATURE PRECEDINGS
  • 2010-10-19 Foregut microbiome in development of esophageal adenocarcinoma in NATURE PRECEDINGS
  • 2010-03-30 The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data in STANDARDS IN GENOMIC SCIENCES
  • 2010 Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...) in LINKING LITERATURE, INFORMATION, AND KNOWLEDGE FOR BIOLOGY
  • 2008-12 Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering in BMC BIOINFORMATICS
  • 2007-12 Evolution of allostery in the cyclic nucleotide binding module in GENOME BIOLOGY
  • 2007-10 Viral photosynthetic reaction center genes and transcripts in the marine environment in THE ISME JOURNAL
  • 2004 Haplotyping as Perfect Phylogeny in COMPUTATIONAL METHODS FOR SNPS AND HAPLOTYPE INFERENCE
  • 2004 A Survey of Computational Methods for Determining Haplotypes in COMPUTATIONAL METHODS FOR SNPS AND HAPLOTYPE INFERENCE
  • 2003 Combinatorial Problems Arising in SNP and Haplotype Analysis in DISCRETE MATHEMATICS AND THEORETICAL COMPUTER SCIENCE
  • 1994 Unifying themes for network selection in ALGORITHMS AND COMPUTATION
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