Adam Godzik

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Publications in SciGraph latest 50 shown

  • 2017-12 Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework in GENOME MEDICINE
  • 2017-08 Comparison of algorithms for the detection of cancer drivers at subgene resolution in NATURE METHODS
  • 2017 The “Sticky Patch” Model of Crystallization and Modification of Proteins for Enhanced Crystallizability in PROTEIN CRYSTALLOGRAPHY
  • 2015-12 Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions in BMC BIOINFORMATICS
  • 2015-12 PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB in SOURCE CODE FOR BIOLOGY AND MEDICINE
  • 2014-12 Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase in BMC BIOINFORMATICS
  • 2014-12 ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures in BMC BIOINFORMATICS
  • 2014-12 Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase in BMC BIOINFORMATICS
  • 2014-12 Phylogenomic analysis of glycogen branching and debranching enzymatic duo in BMC EVOLUTIONARY BIOLOGY
  • 2014-12 Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis in BMC BIOINFORMATICS
  • 2014-04 Structural systems biology: from bacterial to cancer networks in BMC GENOMICS
  • 2013-12 Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila in BMC BIOINFORMATICS
  • 2013-12 LUD, a new protein domain associated with lactate utilization in BMC BIOINFORMATICS
  • 2013-12 Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks in BMC GENOMICS
  • 2013-11 Divergent evolution of protein conformational dynamics in dihydrofolate reductase in NATURE STRUCTURAL & MOLECULAR BIOLOGY
  • 2013-01 MORPH-PRO: a novel algorithm and web server for protein morphing in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2012-11-21 PSI Impact: Ex-cited Use of PSI Structures in PSI STRUCTURAL GENOMICS KNOWLEDGEBASE
  • 2012 MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing in ALGORITHMS IN BIOINFORMATICS
  • 2011-01 Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires in GENOME BIOLOGY
  • 2010-12 TOPSAN: a collaborative annotation environment for structural genomics in BMC BIOINFORMATICS
  • 2010-12 A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins in BMC GENOMICS
  • 2010-11 Evolution of the protein domain repertoire of eukaryotes reveals strong functional patterns in GENOME BIOLOGY
  • 2010-05 Domain architecture evolution of pattern-recognition receptors in IMMUNOGENETICS
  • 2009-12 Understanding diversity of human innate immunity receptors: analysis of surface features of leucine-rich repeat domains in NLRs and TLRs in BMC IMMUNOLOGY
  • 2009-04 Structural genomics is the largest contributor of novel structural leverage in JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS
  • 2009-02 Shotgun metaproteomics of the human distal gut microbiota in THE ISME JOURNAL
  • 2008-12 TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model in BMC BIOINFORMATICS
  • 2008-08 Novel genes dramatically alter regulatory network topology in amphioxus in GENOME BIOLOGY
  • 2007-10 Surprising complexity of the ancestral apoptosis network in GENOME BIOLOGY
  • 2007-10 Computational protein function prediction: Are we making progress? in CELLULAR AND MOLECULAR LIFE SCIENCES
  • 2007-05 The 2006 Automated Function Prediction Meeting in BMC BIOINFORMATICS
  • 2007-01 SURF’s UP! — Protein classification by surface comparisons in JOURNAL OF BIOSCIENCES
  • 2006-12 Representing and comparing protein structures as paths in three-dimensional space in BMC BIOINFORMATICS
  • 2006-03 Support-vector-machine classification of linear functional motifs in proteins in JOURNAL OF MOLECULAR MODELING
  • 2005-11 Molecular modeling of phosphorylation sites in proteins using a database of local structure segments in JOURNAL OF MOLECULAR MODELING
  • 2004-12 Integrated web service for improving alignment quality based on segments comparison in BMC BIOINFORMATICS
  • 2004 The dual-specific protein tyrosine phosphatase family in PROTEIN PHOSPHATASES
  • 2003-12 Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization in BMC BIOINFORMATICS
  • 2003-06 The apoptosis database in CELL DEATH & DIFFERENTIATION
  • 2003-01 Tyrosine phosphorylation of VHR phosphatase by ZAP-70 in NATURE IMMUNOLOGY
  • 2002-12 Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs in NATURE
  • 2002-01 Response to 'Interaction of DAP3 and FADD only after cellular disruption' in NATURE IMMUNOLOGY
  • 1998-10 Multiple Model Approach: Exploring the Limits of Comparative Modeling in JOURNAL OF MOLECULAR MODELING
  • 1993-08 De novo and inverse folding predictions of protein structure and dynamics in JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
  • 1987-12 The Monte Carlo simulation of pearl chain formation in RADIATION AND ENVIRONMENTAL BIOPHYSICS
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