Philip Hugenholtz


Ontology type: schema:Person     


Person Info

NAME

Philip

SURNAME

Hugenholtz

Publications in SciGraph latest 50 shown

  • 2019-04 An evolving view of methane metabolism in the Archaea in NATURE REVIEWS MICROBIOLOGY
  • 2019-03 A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) in THE ISME JOURNAL
  • 2018-12-17 Minimum Information about an Uncultivated Virus Genome (MIUViG) in NATURE BIOTECHNOLOGY
  • 2018-12 Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo in SCIENTIFIC REPORTS
  • 2018-12 Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size in THE ISME JOURNAL
  • 2018-08-27 A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life in NATURE BIOTECHNOLOGY
  • 2018-07-06 Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2018-04-05 Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life in NATURE BIOTECHNOLOGY
  • 2018-02-06 Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2018-02 Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life in NATURE MICROBIOLOGY
  • 2017-12 Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence in NATURE COMMUNICATIONS
  • 2017-12 Atmospheric trace gases support primary production in Antarctic desert surface soil in NATURE
  • 2017-11 Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life in NATURE MICROBIOLOGY
  • 2017-10 A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities in NATURE MICROBIOLOGY
  • 2017-06-12 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life in NATURE BIOTECHNOLOGY
  • 2017-01 Emerging pathogenic links between microbiota and the gut–lung axis in NATURE REVIEWS MICROBIOLOGY
  • 2016-12 Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57 in STANDARDS IN GENOMIC SCIENCES
  • 2016-12 Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals in MICROBIOME
  • 2016-12 Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database in GIGASCIENCE
  • 2016-12 Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota in NATURE MICROBIOLOGY
  • 2016-12 Crosstalk between sugarcane and a plant-growth promoting Burkholderia species in SCIENTIFIC REPORTS
  • 2016-08 High-resolution phylogenetic microbial community profiling in THE ISME JOURNAL
  • 2016-07-05 A catalogue of 136 microbial draft genomes from Red Sea metagenomes in SCIENTIFIC DATA
  • 2016-02 Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions in MICROBIAL ECOLOGY
  • 2015-12 Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains in STANDARDS IN GENOMIC SCIENCES
  • 2015-12 A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes in MICROBIOME
  • 2015-08 Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere in SCIENTIFIC REPORTS
  • 2014-12 Effects of sample treatments on genome recovery via single-cell genomics in THE ISME JOURNAL
  • 2014-12 Discovery of a novel methanogen prevalent in thawing permafrost in NATURE COMMUNICATIONS
  • 2014-12 CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction in MICROBIOME
  • 2014-12 Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae in STANDARDS IN GENOMIC SCIENCES
  • 2014-10 Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters in THE ISME JOURNAL
  • 2014-07-13 Viral tagging reveals discrete populations in Synechococcus viral genome sequence space in NATURE
  • 2014-05-15 Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring in STANDARDS IN GENOMIC SCIENCES
  • 2014-03-15 Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia in STANDARDS IN GENOMIC SCIENCES
  • 2013-12 Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal in THE ISME JOURNAL
  • 2013-10-02 Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio in STANDARDS IN GENOMIC SCIENCES
  • 2013-10-02 Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. in STANDARDS IN GENOMIC SCIENCES
  • 2013-09 Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage in NATURE
  • 2013-08 Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage in NATURE
  • 2013-07 Insights into the phylogeny and coding potential of microbial dark matter in NATURE
  • 2013-06 Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes in NATURE BIOTECHNOLOGY
  • 2013-05-25 Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva in STANDARDS IN GENOMIC SCIENCES
  • 2013-05-25 Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T) in STANDARDS IN GENOMIC SCIENCES
  • 2013-05-20 Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift in STANDARDS IN GENOMIC SCIENCES
  • 2013-04-15 High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T) in STANDARDS IN GENOMIC SCIENCES
  • 2013-04-15 Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T) in STANDARDS IN GENOMIC SCIENCES
  • 2013-04-15 Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema in STANDARDS IN GENOMIC SCIENCES
  • 2013-04-15 Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug) in STANDARDS IN GENOMIC SCIENCES
  • 2013-04-15 Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT) in STANDARDS IN GENOMIC SCIENCES
  • JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "affiliation": [
          {
            "affiliation": {
              "id": "https://www.grid.ac/institutes/grid.1003.2", 
              "type": "Organization"
            }, 
            "isCurrent": true, 
            "type": "OrganizationRole"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.184769.5", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.266842.c", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.420081.f", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.27860.3b", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.250008.f", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.135519.a", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.451372.6", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.451309.a", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.411377.7", 
            "type": "Organization"
          }, 
          {
            "id": "https://www.grid.ac/institutes/grid.47840.3f", 
            "type": "Organization"
          }
        ], 
        "familyName": "Hugenholtz", 
        "givenName": "Philip", 
        "id": "sg:person.01055510700.73", 
        "identifier": {
          "name": "orcid_id", 
          "type": "PropertyValue", 
          "value": [
            "0000-0001-5386-7925"
          ]
        }, 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055510700.73", 
          "https://orcid.org/0000-0001-5386-7925"
        ], 
        "sdDataset": "persons", 
        "sdDatePublished": "2019-03-07T14:43", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-researchers-20181010/20181011/dim_researchers/base/researchers_476.json", 
        "type": "Person"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/person.01055510700.73'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/person.01055510700.73'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/person.01055510700.73'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/person.01055510700.73'


     

    This table displays all metadata directly associated to this object as RDF triples.

    41 TRIPLES      11 PREDICATES      23 URIs      8 LITERALS      3 BLANK NODES

    Subject Predicate Object
    1 sg:person.01055510700.73 schema:affiliation N2d05b991c6344400aae8d8b0d8ddcf5b
    2 https://www.grid.ac/institutes/grid.135519.a
    3 https://www.grid.ac/institutes/grid.184769.5
    4 https://www.grid.ac/institutes/grid.250008.f
    5 https://www.grid.ac/institutes/grid.266842.c
    6 https://www.grid.ac/institutes/grid.27860.3b
    7 https://www.grid.ac/institutes/grid.411377.7
    8 https://www.grid.ac/institutes/grid.420081.f
    9 https://www.grid.ac/institutes/grid.451309.a
    10 https://www.grid.ac/institutes/grid.451372.6
    11 https://www.grid.ac/institutes/grid.47840.3f
    12 schema:familyName Hugenholtz
    13 schema:givenName Philip
    14 schema:identifier N1ceec68a6b5042c983f0d0c8109b3a81
    15 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055510700.73
    16 https://orcid.org/0000-0001-5386-7925
    17 schema:sdDatePublished 2019-03-07T14:43
    18 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    19 schema:sdPublisher Ncb21b7548cc84f9d8a90479345fe9e64
    20 sgo:license sg:explorer/license/
    21 sgo:sdDataset persons
    22 rdf:type schema:Person
    23 N1ceec68a6b5042c983f0d0c8109b3a81 schema:name orcid_id
    24 schema:value 0000-0001-5386-7925
    25 rdf:type schema:PropertyValue
    26 N2d05b991c6344400aae8d8b0d8ddcf5b schema:affiliation https://www.grid.ac/institutes/grid.1003.2
    27 sgo:isCurrent true
    28 rdf:type schema:OrganizationRole
    29 Ncb21b7548cc84f9d8a90479345fe9e64 schema:name Springer Nature - SN SciGraph project
    30 rdf:type schema:Organization
    31 https://www.grid.ac/institutes/grid.1003.2 schema:Organization
    32 https://www.grid.ac/institutes/grid.135519.a schema:Organization
    33 https://www.grid.ac/institutes/grid.184769.5 schema:Organization
    34 https://www.grid.ac/institutes/grid.250008.f schema:Organization
    35 https://www.grid.ac/institutes/grid.266842.c schema:Organization
    36 https://www.grid.ac/institutes/grid.27860.3b schema:Organization
    37 https://www.grid.ac/institutes/grid.411377.7 schema:Organization
    38 https://www.grid.ac/institutes/grid.420081.f schema:Organization
    39 https://www.grid.ac/institutes/grid.451309.a schema:Organization
    40 https://www.grid.ac/institutes/grid.451372.6 schema:Organization
    41 https://www.grid.ac/institutes/grid.47840.3f schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...