Philip Hugenholtz


Ontology type: schema:Person     


Person Info

NAME

Philip

SURNAME

Hugenholtz

Publications in SciGraph latest 50 shown

  • 2021-10-06 Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years in MICROBIOME
  • 2021-09-17 Effects of laboratory domestication on the rodent gut microbiome in ISME COMMUNICATIONS
  • 2021-06-28 Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages in ISME COMMUNICATIONS
  • 2021-06-24 Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome in NATURE MICROBIOLOGY
  • 2021-06-21 A standardized archaeal taxonomy for the Genome Taxonomy Database in NATURE MICROBIOLOGY
  • 2021-05-25 Chemosynthetic and photosynthetic bacteria contribute differentially to primary production across a steep desert aridity gradient in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2021-05-05 Critical evaluation of faecal microbiome preservation using metagenomic analysis in ISME COMMUNICATIONS
  • 2021-05-03 Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2021-04-06 Prokaryotic taxonomy and nomenclature in the age of big sequence data in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2021-03-22 Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2020-11-18 Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease in NATURE COMMUNICATIONS
  • 2020-11-12 Author Correction: Roadmap for naming uncultivated Archaea and Bacteria in NATURE MICROBIOLOGY
  • 2020-07-20 A unified catalog of 204,938 reference genomes from the human gut microbiome in NATURE BIOTECHNOLOGY
  • 2020-06-19 COVID-19 pandemic reveals the peril of ignoring metadata standards in SCIENTIFIC DATA
  • 2020-06-15 Broad spectrum antibiotic-degrading metallo-β-lactamases are phylogenetically diverse in PROTEIN & CELL
  • 2020-06-08 Roadmap for naming uncultivated Archaea and Bacteria in NATURE MICROBIOLOGY
  • 2020-05-08 Fluconazole resistance in Candida albicans is induced by Pseudomonas aeruginosa quorum sensing in SCIENTIFIC REPORTS
  • 2020-05-04 Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea in NATURE BIOTECHNOLOGY
  • 2020-04-27 A complete domain-to-species taxonomy for Bacteria and Archaea in NATURE BIOTECHNOLOGY
  • 2019-11-21 Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2019-08-21 Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala in ANIMAL MICROBIOME
  • 2019-08-05 Defining the human gut host–phage network through single-cell viral tagging in NATURE MICROBIOLOGY
  • 2019-05-20 Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales in NATURE MICROBIOLOGY
  • 2019-03-11 Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments in NATURE MICROBIOLOGY
  • 2019-01-21 An evolving view of methane metabolism in the Archaea in NATURE REVIEWS MICROBIOLOGY
  • 2018-12-17 Minimum Information about an Uncultivated Virus Genome (MIUViG) in NATURE BIOTECHNOLOGY
  • 2018-10-15 A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2018-08-27 A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life in NATURE BIOTECHNOLOGY
  • 2018-08-01 Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2018-07-06 Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2018-05-25 Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo in SCIENTIFIC REPORTS
  • 2018-04-05 Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life in NATURE BIOTECHNOLOGY
  • 2018-02-01 Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2017-12-12 Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life in NATURE MICROBIOLOGY
  • 2017-12-06 Atmospheric trace gases support primary production in Antarctic desert surface soil in NATURE
  • 2017-09-11 Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life in NATURE MICROBIOLOGY
  • 2017-08-28 A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities in NATURE MICROBIOLOGY
  • 2017-08-09 Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence in NATURE COMMUNICATIONS
  • 2017-08-01 Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea in NATURE BIOTECHNOLOGY
  • 2017-06-12 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life in NATURE BIOTECHNOLOGY
  • 2016-11-21 Crosstalk between sugarcane and a plant-growth promoting Burkholderia species in SCIENTIFIC REPORTS
  • 2016-10-03 Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota in NATURE MICROBIOLOGY
  • 2016-10-03 Emerging pathogenic links between microbiota and the gut–lung axis in NATURE REVIEWS MICROBIOLOGY
  • 2016-09-06 Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57 in ENVIRONMENTAL MICROBIOME
  • 2016-07-07 Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals in MICROBIOME
  • 2016-07-05 A catalogue of 136 microbial draft genomes from Red Sea metagenomes in SCIENTIFIC DATA
  • 2016-02-09 High-resolution phylogenetic microbial community profiling in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2015-06-26 Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions in MICROBIAL ECOLOGY
  • 2015-05-17 Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains in ENVIRONMENTAL MICROBIOME
  • 2015-03-02 Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere in SCIENTIFIC REPORTS
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