Dan Knights

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Publications in SciGraph latest 50 shown

  • 2018-12 CLOUD: a non-parametric detection test for microbiome outliers in MICROBIOME
  • 2018-12 Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice in SCIENTIFIC REPORTS
  • 2018-12 Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model in SCIENTIFIC REPORTS
  • 2018-03 Publisher Correction: Enterotypes in the landscape of gut microbial community composition in NATURE MICROBIOLOGY
  • 2018-02 Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice in NATURE MICROBIOLOGY
  • 2018-01 Enterotypes in the landscape of gut microbial community composition in NATURE MICROBIOLOGY
  • 2017-12 Infant fungal communities: current knowledge and research opportunities in BMC MEDICINE
  • 2016-12 Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection in GENOME MEDICINE
  • 2016-12 Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity in SCIENTIFIC REPORTS
  • 2016-12 Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection in GENOME MEDICINE
  • 2016-11 Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice in NATURE MICROBIOLOGY
  • 2016-09 Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies in NATURE BIOTECHNOLOGY
  • 2015-12 Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection in MICROBIOME
  • 2015-12 Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment in GENOME MEDICINE
  • 2015-12 Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst in NATURE COMMUNICATIONS
  • 2015 Syntax and Semantics of Coding in Python in HYDROCARBON AND LIPID MICROBIOLOGY PROTOCOLS
  • 2015 Using QIIME to Evaluate the Microbial Communities Within Hydrocarbon Environments in HYDROCARBON AND LIPID MICROBIOLOGY PROTOCOLS
  • 2014-12 Complex host genetics influence the microbiome in inflammatory bowel disease in GENOME MEDICINE
  • 2013-09 Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences in NATURE BIOTECHNOLOGY
  • 2013-01 Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat in THE ISME JOURNAL
  • 2012-06 Human gut microbiome viewed across age and geography in NATURE
  • 2011-09 Bayesian community-wide culture-independent microbial source tracking in NATURE METHODS
  • 2011-05 Moving pictures of the human microbiome in GENOME BIOLOGY
  • 2011-05 Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications in NATURE BIOTECHNOLOGY
  • 2011-04 Supervised classification of microbiota mitigates mislabeling errors in THE ISME JOURNAL
  • 2011-02 UniFrac: an effective distance metric for microbial community comparison in THE ISME JOURNAL
  • 2010-05 Direct sequencing of the human microbiome readily reveals community differences in GENOME BIOLOGY
  • 2010-05 QIIME allows analysis of high-throughput community sequencing data in NATURE METHODS
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