Alice C Mchardy

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Alice C



Publications in SciGraph latest 50 shown

  • 2019-03 Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life in NATURE MICROBIOLOGY
  • 2018-12 A Fréchet tree distance measure to compare phylogeographic spread paths across trees in SCIENTIFIC REPORTS
  • 2018-12 Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses in SCIENTIFIC REPORTS
  • 2018-12 “Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system in MICROBIOME
  • 2018-08-28 Software for Characterizing the Antigenic and Genetic Evolution of Human Influenza Viruses in INFLUENZA VIRUS
  • 2017-12 Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes in BIOTECHNOLOGY FOR BIOFUELS
  • 2017-12 Investigation of different nitrogen reduction routes and their key microbial players in wood chip-driven denitrification beds in SCIENTIFIC REPORTS
  • 2017-12 Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms in SCIENTIFIC REPORTS
  • 2017-11 Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software in NATURE METHODS
  • 2017-02 Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium in NATURE MICROBIOLOGY
  • 2017 Metagenomics and CAZyme Discovery in PROTEIN-CARBOHYDRATE INTERACTIONS
  • 2017 Finding Genes in Genome Sequence in BIOINFORMATICS
  • 2016-09-29 Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi in NATURE COMMUNICATIONS
  • 2016-09 Evolution of 2009 H1N1 influenza viruses during the pandemic correlates with increased viral pathogenicity and transmissibility in the ferret model in SCIENTIFIC REPORTS
  • 2016-07 Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data in SCIENTIFIC REPORTS
  • 2016-05-06 Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi in NATURE COMMUNICATIONS
  • 2015-12-02 Functional overlap of the Arabidopsis leaf and root microbiota in NATURE
  • 2015-12 Bioboxes: standardised containers for interchangeable bioinformatics software in GIGASCIENCE
  • 2015-09 Genomics and drug profiling of fatal TCF3-HLF−positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options in NATURE GENETICS
  • 2014-12 Microbial genome-enabled insights into plant-microorganism interactions in NATURE REVIEWS GENETICS
  • 2014-12 Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders in BIOTECHNOLOGY FOR BIOFUELS
  • 2013-12 De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes in BIOTECHNOLOGY FOR BIOFUELS
  • 2013 Evaluating the Evolutionary Dynamics of Viral Populations in DYNAMIC MODELS OF INFECTIOUS DISEASES
  • 2012-02 Defining seasonal marine microbial community dynamics in THE ISME JOURNAL
  • 2011-12 Inferring functional modules of protein families with probabilistic topic models in BMC BIOINFORMATICS
  • 2011-03 Taxonomic metagenome sequence assignment with structured output models in NATURE METHODS
  • 2011-01 Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium in THE ISME JOURNAL
  • 2010 Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project in STANDARDS IN GENOMIC SCIENCES
  • 2008-09 High-resolution metagenomics targets specific functional types in complex microbial communities in NATURE BIOTECHNOLOGY
  • 2008 Viral bioinformatics in MODERN GENOME ANNOTATION
  • 2008 Finding Genes in Genome Sequence in BIOINFORMATICS
  • 2007-11 Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite in NATURE
  • 2007-06 Use of simulated data sets to evaluate the fidelity of metagenomic processing methods in NATURE METHODS
  • 2007-04 Corrigendum: Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72 in NATURE BIOTECHNOLOGY
  • 2007-01 Accurate phylogenetic classification of variable-length DNA fragments in NATURE METHODS
  • 2006-11 Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72 in NATURE BIOTECHNOLOGY
  • 2006-10 Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities in NATURE BIOTECHNOLOGY
  • 2006-08 Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis in NATURE BIOTECHNOLOGY
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