David R Gilbert

Ontology type: schema:Person     

Person Info


David R



Publications in SciGraph latest 50 shown

  • 2022-02-18 Author Correction: Cell fate decisions are specified by the dynamic ERK interactome in NATURE CELL BIOLOGY
  • 2019-04-18 Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking in BMC BIOINFORMATICS
  • 2018-08-24 Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2018-07-09 Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes in BMC BIOINFORMATICS
  • 2018-02-28 Petri-net-based 2D design of DNA walker circuits in NATURAL COMPUTING
  • 2014-12-02 Automatic validation of computational models using pseudo-3D spatio-temporal model checking in BMC SYSTEMS BIOLOGY
  • 2014-11-15 Implementation of linear minimum area enclosing triangle algorithm in COMPUTATIONAL AND APPLIED MATHEMATICS
  • 2014-06-12 Computational models for inferring biochemical networks in NEURAL COMPUTING AND APPLICATIONS
  • 2014 Empirical Study of Computational Intelligence Strategies for Biochemical Systems Modelling in NATURE INSPIRED COOPERATIVE STRATEGIES FOR OPTIMIZATION (NICSO 2013)
  • 2013 Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology in APPLICATION AND THEORY OF PETRI NETS AND CONCURRENCY
  • 2013 Modelling and Analysis of Phase Variation in Bacterial Colony Growth in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2012 Towards an Ontology of Biomodelling in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2012 A Hybrid Approach to Piecewise Modelling of Biochemical Systems in PARALLEL PROBLEM SOLVING FROM NATURE - PPSN XII
  • 2011 Bootstrapping Parameter Estimation in Dynamic Systems in DISCOVERY SCIENCE
  • 2011 How Might Petri Nets Enhance Your Systems Biology Toolkit in APPLICATIONS AND THEORY OF PETRI NETS
  • 2010-09-18 Engineering a novel self-powering electrochemical biosensor in SYSTEMS AND SYNTHETIC BIOLOGY
  • 2010-09 Synthetic biology gains momentum in Europe in SYSTEMS AND SYNTHETIC BIOLOGY
  • 2010-07-16 Computational Modelling of Kinase Signalling Cascades in MAP KINASE SIGNALING PROTOCOLS
  • 2010-03-17 An optimized TOPS+ comparison method for enhanced TOPS models in BMC BIOINFORMATICS
  • 2010 Biomodel Engineering – From Structure to Behavior in TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY XII
  • 2009-11-22 Cell fate decisions are specified by the dynamic ERK interactome in NATURE CELL BIOLOGY
  • 2009-10-05 Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway in BMC SYSTEMS BIOLOGY
  • 2009-01-28 Prediction of protein-protein interaction types using association rule based classification in BMC BIOINFORMATICS
  • 2009 An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways in MEMBRANE COMPUTING
  • 2009 Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments in TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY XI
  • 2008 A Model Checking Approach to the Parameter Estimation of Biochemical Pathways in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2008-01-01 A Case Study in Model-driven Synthetic Biology in BIOLOGICALLY-INSPIRED COLLABORATIVE COMPUTING
  • 2008-01-01 Petri Nets for Systems and Synthetic Biology in FORMAL METHODS FOR COMPUTATIONAL SYSTEMS BIOLOGY
  • 2008-01-01 Combining One-Class Classification Models Based on Diverse Biological Data for Prediction of Protein-Protein Interactions in DATA INTEGRATION IN THE LIFE SCIENCES
  • 2007-08-30 Automatic generation of 3D motifs for classification of protein binding sites in BMC BIOINFORMATICS
  • 2007-05-08 Modelling the cAMP pathway using BioNessie, and the use of BVP techniques for solving ODEs in BMC SYSTEMS BIOLOGY
  • 2007-03-20 Predicting protein function by machine learning on amino acid sequences – a critical evaluation in BMC GENOMICS
  • 2007 A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2007-01-01 Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning in INTELLIGENT DATA ENGINEERING AND AUTOMATED LEARNING - IDEAL 2007
  • 2006 Analysis of Signalling Pathways Using Continuous Time Markov Chains in TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY VI
  • 2006 From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis in PETRI NETS AND OTHER MODELS OF CONCURRENCY - ICATPN 2006
  • 2005-09-21 GeneRank: Using search engine technology for the analysis of microarray experiments in BMC BIOINFORMATICS
  • 2005-09 Feature Selection and the Class Imbalance Problem in Predicting Protein Function from Sequence in APPLIED BIOINFORMATICS
  • 2004 An Assessment of Feature Relevance in Predicting Protein Function from Sequence in INTELLIGENT DATA ENGINEERING AND AUTOMATED LEARNING – IDEAL 2004
  • 2003-02-28 An Overview of Data Models for the Analysis of Biochemical Pathways in COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
  • 2002 Graph-Based Analysis of Metabolic Networks in BIOINFORMATICS AND GENOME ANALYSIS
  • 2001-10-24 Multi-agent Systems as Concurrent Constraint Processes in SOFSEM 2001: THEORY AND PRACTICE OF INFORMATICS
  • 2001-08-17 Pattern Matching and Pattern Discovery Algorithms for Protein Topologies in ALGORITHMS IN BIOINFORMATICS
  • 2001-06-28 Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data in COMPUTATIONAL BIOLOGY
  • 2001-06 Bioinformatics and Constraints in CONSTRAINTS
  • 2001-06 Introduction to the Special Issue on Bioinformatics in CONSTRAINTS
  • 2000-12-15 Concurrent Constraint Programming with Process Mobility in COMPUTATIONAL LOGIC — CL 2000
  • 2000 A Model for Interaction of Agents and Environments in RECENT TRENDS IN ALGEBRAIC DEVELOPMENT TECHNIQUES
  • 1998-01 A general theory of action languages in CYBERNETICS AND SYSTEMS ANALYSIS
  • JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "affiliation": [
            "affiliation": {
              "id": "http://www.grid.ac/institutes/grid.7728.a", 
              "type": "Organization"
            "isCurrent": true, 
            "type": "OrganizationRole"
            "id": "http://www.grid.ac/institutes/grid.8756.c", 
            "type": "Organization"
            "id": "http://www.grid.ac/institutes/grid.9845.0", 
            "type": "Organization"
            "id": "http://www.grid.ac/institutes/grid.225360.0", 
            "type": "Organization"
            "id": "http://www.grid.ac/institutes/grid.28577.3f", 
            "type": "Organization"
        "familyName": "Gilbert", 
        "givenName": "David R", 
        "id": "sg:person.01024373510.92", 
        "sameAs": [
        "sdDataset": "persons", 
        "sdDatePublished": "2022-05-20T08:04", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        "sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/person/person_658.jsonl", 
        "type": "Person"

    Download the RDF metadata as:  json-ld nt turtle xml License info


    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/person.01024373510.92'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/person.01024373510.92'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/person.01024373510.92'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/person.01024373510.92'


    Preview window. Press ESC to close (or click here)