Adam P Arkin


Ontology type: schema:Person     


Person Info

NAME

Adam P

SURNAME

Arkin

Publications in SciGraph latest 50 shown

  • 2019-12 Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria in NATURE COMMUNICATIONS
  • 2019-04 The selective pressures on the microbial community in a metal-contaminated aquifer in THE ISME JOURNAL
  • 2018-11 Genetic dissection of interspecific differences in yeast thermotolerance in NATURE GENETICS
  • 2018-09-24 Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli in NATURE BIOTECHNOLOGY
  • 2018-07-06 KBase: The United States Department of Energy Systems Biology Knowledgebase in NATURE BIOTECHNOLOGY
  • 2018-05 Mutant phenotypes for thousands of bacterial genes of unknown function in NATURE
  • 2017-12 The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism in BMC BIOINFORMATICS
  • 2017-12 Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism in BMC BIOINFORMATICS
  • 2017-12 Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts in BIOTECHNOLOGY FOR BIOFUELS
  • 2017-12 A metabolic pathway for catabolizing levulinic acid in bacteria in NATURE MICROBIOLOGY
  • 2017-12 Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site in STANDARDS IN GENOMIC SCIENCES
  • 2017-04-26 Programming mRNA decay to modulate synthetic circuit resource allocation in NATURE COMMUNICATIONS
  • 2016-11 Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2015-11 Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris in THE ISME JOURNAL
  • 2015-06 Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate in THE ISME JOURNAL
  • 2014-06 Metabolomic data streaming for biology-dependent data acquisition in NATURE BIOTECHNOLOGY
  • 2014-05 A versatile framework for microbial engineering using synthetic non-coding RNAs in NATURE REVIEWS MICROBIOLOGY
  • 2013-12 RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria in BMC GENOMICS
  • 2013-12 Erratum to: Global analysis of host response to induction of a latent bacteriophage in BMC MICROBIOLOGY
  • 2013-12 RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes in BMC GENOMICS
  • 2013-09 Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution in THE ISME JOURNAL
  • 2013-04 Precise and reliable gene expression via standard transcription and translation initiation elements in NATURE METHODS
  • 2013-04 Quantitative estimation of activity and quality for collections of functional genetic elements in NATURE METHODS
  • 2012-12 Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli in MICROBIAL CELL FACTORIES
  • 2012-12 Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state in BMC GENOMICS
  • 2012-11 An adaptor from translational to transcriptional control enables predictable assembly of complex regulation in NATURE METHODS
  • 2012-11 Functional responses of methanogenic archaea to syntrophic growth in THE ISME JOURNAL
  • 2012-10 RNA processing enables predictable programming of gene expression in NATURE BIOTECHNOLOGY
  • 2012-05 Rationally designed families of orthogonal RNA regulators of translation in NATURE CHEMICAL BIOLOGY
  • 2011-12 Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus in BMC GENOMICS
  • 2011-10 Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium in GENOME BIOLOGY
  • 2011-09-23 Complete genome sequence of “Enterobacter lignolyticus” SCF1 in STANDARDS IN GENOMIC SCIENCES
  • 2011-06 How sulphate-reducing microorganisms cope with stress: lessons from systems biology in NATURE REVIEWS MICROBIOLOGY
  • 2011-02 Regulation of transcription by unnatural amino acids in NATURE BIOTECHNOLOGY
  • 2011 Simulated niche partitioning by bacteria in UNIFYING THEMES IN COMPLEX SYSTEMS
  • 2010-12 BglBricks: A flexible standard for biological part assembly in JOURNAL OF BIOLOGICAL ENGINEERING
  • 2010-11 Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris in THE ISME JOURNAL
  • 2009-12 Snapshot of iron response in Shewanella oneidensis by gene network reconstruction in BMC GENOMICS
  • 2009-12 Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae in BMC GENOMICS
  • 2009-11 Evolution, ecology and the engineered organism: lessons for synthetic biology in GENOME BIOLOGY
  • 2009 Stochastic Models of Biological Processes in ENCYCLOPEDIA OF COMPLEXITY AND SYSTEMS SCIENCE
  • 2008-09 Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli in GENOME BIOLOGY
  • 2008-07 Setting the standard in synthetic biology in NATURE BIOTECHNOLOGY
  • 2008 Genetics and Genomics of Sulfate Respiration in Desulfovibrio in MICROBIAL SULFUR METABOLISM
  • 2007-12 Global analysis of host response to induction of a latent bacteriophage in BMC MICROBIOLOGY
  • 2007 Data and Databases in SYSTEMS BIOLOGY
  • 2007 Modeling and Network Organization in SYSTEMS BIOLOGY
  • 2006-12 OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments in BMC BIOINFORMATICS
  • 2006-10 Deviant effects in molecular reaction pathways in NATURE BIOTECHNOLOGY
  • 2006-08 Fast, cheap and somewhat in control in GENOME BIOLOGY
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