Pieter C Dorrestein

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Pieter C



Publications in SciGraph latest 50 shown

  • 2022-04-20 foodMASST a mass spectrometry search tool for foods and beverages in NPJ SCIENCE OF FOOD
  • 2022-04-19 The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study) in SCIENTIFIC REPORTS
  • 2022-03-14 Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides in BMC MICROBIOLOGY
  • 2022-01-27 Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity in NATURE MICROBIOLOGY
  • 2021-12-13 Mammalian gut metabolomes mirror microbiome composition and host phylogeny in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2021-12-03 GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser in NATURE METHODS
  • 2021-12-01 Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut in NATURE COMMUNICATIONS
  • 2021-11-18 Native mass spectrometry-based metabolomics identifies metal-binding compounds in NATURE CHEMISTRY
  • 2021-11-05 Multi-omics of human plasma reveals molecular features of dysregulated inflammation and accelerated aging in schizophrenia in MOLECULAR PSYCHIATRY
  • 2021-10-14 High-confidence structural annotation of metabolites absent from spectral libraries in NATURE BIOTECHNOLOGY
  • 2021-09-22 Mass spectrometry-based metabolomics in microbiome investigations in NATURE REVIEWS MICROBIOLOGY
  • 2021-07-09 Quick-start infrastructure for untargeted metabolomics analysis in GNPS in NATURE METABOLISM
  • 2021-07-08 Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery in NATURE COMMUNICATIONS
  • 2021-06-22 Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment in NATURE COMMUNICATIONS
  • 2021-05-28 Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery in NATURE COMMUNICATIONS
  • 2021-04-14 Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection in MICROBIOME
  • 2021-02-15 A community resource for paired genomic and metabolomic data mining in NATURE CHEMICAL BIOLOGY
  • 2021-01-04 Reply to: Examining microbe–metabolite correlations by linear methods in NATURE METHODS
  • 2020-11-23 Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra in NATURE BIOTECHNOLOGY
  • 2020-11-16 Chemically informed analyses of metabolomics mass spectrometry data with Qemistree in NATURE CHEMICAL BIOLOGY
  • 2020-11-12 Fungal–bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds in COMMUNICATIONS BIOLOGY
  • 2020-11-09 Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data in NATURE BIOTECHNOLOGY
  • 2020-10-21 Publisher Correction: Database-independent molecular formula annotation using Gibbs sampling through ZODIAC in NATURE MACHINE INTELLIGENCE
  • 2020-10-13 Database-independent molecular formula annotation using Gibbs sampling through ZODIAC in NATURE MACHINE INTELLIGENCE
  • 2020-08-24 Feature-based molecular networking in the GNPS analysis environment in NATURE METHODS
  • 2020-08-17 ReDU: a framework to find and reanalyze public mass spectrometry data in NATURE METHODS
  • 2020-05-13 Reproducible molecular networking of untargeted mass spectrometry data using GNPS in NATURE PROTOCOLS
  • 2020-03-02 Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep in SCIENTIFIC REPORTS
  • 2020-02-26 Global chemical effects of the microbiome include new bile-acid conjugations in NATURE
  • 2020-01-01 Mass spectrometry searches using MASST in NATURE BIOTECHNOLOGY
  • 2019-12-19 The emergence of microbiome centres in NATURE MICROBIOLOGY
  • 2019-12-17 Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media in SCIENTIFIC DATA
  • 2019-12-10 The Microbiome and Its Potential for Pharmacology in CONCEPTS AND PRINCIPLES OF PHARMACOLOGY
  • 2019-11-04 Learning representations of microbe–metabolite interactions in NATURE METHODS
  • 2019-11-04 Home chemical and microbial transitions across urbanization in NATURE MICROBIOLOGY
  • 2019-10-31 Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads in GENOME BIOLOGY
  • 2019-08-09 Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 in NATURE BIOTECHNOLOGY
  • 2019-07-24 Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 in NATURE BIOTECHNOLOGY
  • 2019-06-12 The impact of skin care products on skin chemistry and microbiome dynamics in BMC BIOLOGY
  • 2019-04-26 Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media in SCIENTIFIC DATA
  • 2019-04-23 The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization in NATURE COMMUNICATIONS
  • 2019-03-18 SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information in NATURE METHODS
  • 2019-02-28 Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking in SCIENTIFIC REPORTS
  • 2019-02-13 Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome in MICROBIOME
  • 2019 Data generation and analysis with SIRIUS 4 on two biological case studies in PROTOCOL EXCHANGE
  • 2018-10-02 Dereplication of microbial metabolites through database search of mass spectra in NATURE COMMUNICATIONS
  • 2018-10-01 Qiita: rapid, web-enabled microbiome meta-analysis in NATURE METHODS
  • 2018-09-28 Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter in JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
  • 2018-07-04 Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity in NATURE
  • 2018-05-23 Best practices for analysing microbiomes in NATURE REVIEWS MICROBIOLOGY
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