A Rice Gene, Gs3, Exerting Primary Control Over Grain Length And Grain Weight


Ontology type: sgo:Patent     


Patent Info

DATE

N/A

AUTHORS

ZHANG, QIFA , FAN, CHUCHUAN , XING, YONGZHONG

ABSTRACT

The present invention relates to an isolated major gene GS3 which regulates grain weight and grain length in the rice and the cloning of said gene. The DNA sequence of GS3 gene is as shown in SEQ ID NO. 1 and is 7883bp in length. GS3 gene comprises 5 exons and encodes 232 amino acids. It is predicted based on bioinformatics analysis that said protein contains conserved domains including a PEBP-like domain, a transmembrane domain, a cysteine-rich domain of TNFR/NGFR and a VWFC domain. cDNA sequence of said gene is as shown in SEQ ID NO. 2. By sequence alignment between three large grain species and 3 small grain species of rice, it is revealed there is only one common single nucleotide mutation in a 7.9-kb region between the two different grain-length groups. Said nucleotide mutation is located at the second exon of the GS3 gene, in which a cysteine codon (TGC) in the small-grain group is mutated to a termination codon (TGA) in the large-grain group. This mutation causes a premature termination in the large-grain group, which leads to a 178-amino acids truncation (including part of the PEBP-like domain and all the other three conserved domains). The present invention also provides methods of producing transgenic plants comprising sequences disclosed herein. More... »

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/2620", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "name": "ZHANG, QIFA", 
        "type": "Person"
      }, 
      {
        "name": "FAN, CHUCHUAN", 
        "type": "Person"
      }, 
      {
        "name": "XING, YONGZHONG", 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/s0168-9525(00)89157-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013850191"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s001220051549", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027189297", 
          "https://doi.org/10.1007/s001220051549"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-006-0218-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031700894", 
          "https://doi.org/10.1007/s00122-006-0218-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-006-0218-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031700894", 
          "https://doi.org/10.1007/s00122-006-0218-1"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "description": "

The present invention relates to an isolated major gene GS3 which regulates grain weight and grain length in the rice and the cloning of said gene. The DNA sequence of GS3 gene is as shown in SEQ ID NO. 1 and is 7883bp in length. GS3 gene comprises 5 exons and encodes 232 amino acids. It is predicted based on bioinformatics analysis that said protein contains conserved domains including a PEBP-like domain, a transmembrane domain, a cysteine-rich domain of TNFR/NGFR and a VWFC domain. cDNA sequence of said gene is as shown in SEQ ID NO. 2. By sequence alignment between three large grain species and 3 small grain species of rice, it is revealed there is only one common single nucleotide mutation in a 7.9-kb region between the two different grain-length groups. Said nucleotide mutation is located at the second exon of the GS3 gene, in which a cysteine codon (TGC) in the small-grain group is mutated to a termination codon (TGA) in the large-grain group. This mutation causes a premature termination in the large-grain group, which leads to a 178-amino acids truncation (including part of the PEBP-like domain and all the other three conserved domains). The present invention also provides methods of producing transgenic plants comprising sequences disclosed herein.

", "id": "sg:patent.EP-1969124-A1", "keywords": [ "rice gene", "primary control", "invention", "major gene", "weight", "Oryza sativa", "Organism Cloning", "gene", "Base Sequence", "ID", "exon", "amino acid", "bioinformatic analysis", "protein", "conserved domain", "domain", "transmembrane domain", "cysteine-rich domain", "AS", "cDNA sequence", "sequence alignment", "large grain", "small grain", "single nucleotide", "kb region", "nucleotide", "cysteine", "Transient Global Amnesia", "mutation", "premature termination", "method", "Genetically Modified Plant", "sequence" ], "name": "A RICE GENE, GS3, EXERTING PRIMARY CONTROL OVER GRAIN LENGTH AND GRAIN WEIGHT", "recipient": [ { "id": "https://www.grid.ac/institutes/grid.35155.37", "type": "Organization" } ], "sameAs": [ "https://app.dimensions.ai/details/patent/EP-1969124-A1" ], "sdDataset": "patents", "sdDatePublished": "2019-03-07T15:36", "sdLicense": "https://scigraph.springernature.com/explorer/license/", "sdPublisher": { "name": "Springer Nature - SN SciGraph project", "type": "Organization" }, "sdSource": "s3://com.uberresearch.data.dev.patents-pipeline/full_run_10/sn-export/5eb3e5a348d7f117b22cc85fb0b02730/0000100128-0000348334/json_export_c65b015e.jsonl", "type": "Patent" } ]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/patent.EP-1969124-A1'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/patent.EP-1969124-A1'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/patent.EP-1969124-A1'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/patent.EP-1969124-A1'


 

This table displays all metadata directly associated to this object as RDF triples.

73 TRIPLES      14 PREDICATES      49 URIs      40 LITERALS      2 BLANK NODES

Subject Predicate Object
1 sg:patent.EP-1969124-A1 schema:about anzsrc-for:2620
2 schema:author N3d34922114404b5690d70f056d66f41e
3 schema:citation sg:pub.10.1007/s00122-006-0218-1
4 sg:pub.10.1007/s001220051549
5 https://doi.org/10.1016/s0168-9525(00)89157-x
6 schema:description <p>The present invention relates to an isolated major gene GS3 which regulates grain weight and grain length in the rice and the cloning of said gene. The DNA sequence of GS3 gene is as shown in SEQ ID NO. 1 and is 7883bp in length. GS3 gene comprises 5 exons and encodes 232 amino acids. It is predicted based on bioinformatics analysis that said protein contains conserved domains including a PEBP-like domain, a transmembrane domain, a cysteine-rich domain of TNFR/NGFR and a VWFC domain. cDNA sequence of said gene is as shown in SEQ ID NO. 2. By sequence alignment between three large grain species and 3 small grain species of rice, it is revealed there is only one common single nucleotide mutation in a 7.9-kb region between the two different grain-length groups. Said nucleotide mutation is located at the second exon of the GS3 gene, in which a cysteine codon (TGC) in the small-grain group is mutated to a termination codon (TGA) in the large-grain group. This mutation causes a premature termination in the large-grain group, which leads to a 178-amino acids truncation (including part of the PEBP-like domain and all the other three conserved domains). The present invention also provides methods of producing transgenic plants comprising sequences disclosed herein.</p>
7 schema:keywords AS
8 Base Sequence
9 Genetically Modified Plant
10 ID
11 Organism Cloning
12 Oryza sativa
13 Transient Global Amnesia
14 amino acid
15 bioinformatic analysis
16 cDNA sequence
17 conserved domain
18 cysteine
19 cysteine-rich domain
20 domain
21 exon
22 gene
23 invention
24 kb region
25 large grain
26 major gene
27 method
28 mutation
29 nucleotide
30 premature termination
31 primary control
32 protein
33 rice gene
34 sequence
35 sequence alignment
36 single nucleotide
37 small grain
38 transmembrane domain
39 weight
40 schema:name A RICE GENE, GS3, EXERTING PRIMARY CONTROL OVER GRAIN LENGTH AND GRAIN WEIGHT
41 schema:recipient https://www.grid.ac/institutes/grid.35155.37
42 schema:sameAs https://app.dimensions.ai/details/patent/EP-1969124-A1
43 schema:sdDatePublished 2019-03-07T15:36
44 schema:sdLicense https://scigraph.springernature.com/explorer/license/
45 schema:sdPublisher N75a7bda291894d68b5b18fd8e4954924
46 sgo:license sg:explorer/license/
47 sgo:sdDataset patents
48 rdf:type sgo:Patent
49 N3d34922114404b5690d70f056d66f41e rdf:first N8852fc481abe4a9daced84e23a0a6ad1
50 rdf:rest N5c232661c4b9447992ec912217baa47f
51 N5c232661c4b9447992ec912217baa47f rdf:first Nab90c42d28e24addb78ae9bc1ee3f36d
52 rdf:rest Nd89ab5aa864447cc9d9e76eafbf8538d
53 N75a7bda291894d68b5b18fd8e4954924 schema:name Springer Nature - SN SciGraph project
54 rdf:type schema:Organization
55 N8852fc481abe4a9daced84e23a0a6ad1 schema:name ZHANG, QIFA
56 rdf:type schema:Person
57 Nab90c42d28e24addb78ae9bc1ee3f36d schema:name FAN, CHUCHUAN
58 rdf:type schema:Person
59 Nc18ee69ef5a24962a5e7d9f8531a4ab2 schema:name XING, YONGZHONG
60 rdf:type schema:Person
61 Nd89ab5aa864447cc9d9e76eafbf8538d rdf:first Nc18ee69ef5a24962a5e7d9f8531a4ab2
62 rdf:rest rdf:nil
63 anzsrc-for:2620 schema:inDefinedTermSet anzsrc-for:
64 rdf:type schema:DefinedTerm
65 sg:pub.10.1007/s00122-006-0218-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031700894
66 https://doi.org/10.1007/s00122-006-0218-1
67 rdf:type schema:CreativeWork
68 sg:pub.10.1007/s001220051549 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027189297
69 https://doi.org/10.1007/s001220051549
70 rdf:type schema:CreativeWork
71 https://doi.org/10.1016/s0168-9525(00)89157-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1013850191
72 rdf:type schema:CreativeWork
73 https://www.grid.ac/institutes/grid.35155.37 schema:Organization
 




Preview window. Press ESC to close (or click here)


...