Transcriptomics


Ontology type: npg:Subject  | skos:Concept     


Concept Info

NAME

Transcriptomics

DESCRIPTION

Transcriptomics is the study of the transcriptome—the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell—using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the identification of genes that are differentially expressed in distinct cell populations, or in response to different treatments.

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/transcriptomics", 
    "rdfs:label": "Transcriptomics", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Gene Expression Profiles"
      }, 
      {
        "@language": "en", 
        "@value": "Transcript Expression Analysis"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Profiling"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Monitorings"
      }, 
      {
        "@language": "en", 
        "@value": "Transcript Expression Analyses"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Pattern Analysis"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Monitoring"
      }, 
      {
        "@language": "en", 
        "@value": "Transcriptomes"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Signature"
      }, 
      {
        "@language": "en", 
        "@value": "mRNA Differential Display"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Signatures"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Profilings"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Expression Profile"
      }, 
      {
        "@language": "en", 
        "@value": "mRNA Differential Displays"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/molecular-biology"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/genomics"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Transcriptomics is the study of the transcriptome\u2014the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell\u2014using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the identification of genes that are differentially expressed in distinct cell populations, or in response to different treatments."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Transcriptomics"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/molecular-biology", 
    "rdfs:label": "Molecular biology", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Molecular Genetic"
      }, 
      {
        "@language": "en", 
        "@value": "Biochemical Genetic"
      }, 
      {
        "@language": "en", 
        "@value": "Molecular Genetics"
      }, 
      {
        "@language": "en", 
        "@value": "Biochemical Genetics"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Molecular Biology is the field of biology that studies the composition, structure and interactions of cellular molecules \u0096  such as nucleic acids and proteins \u0096 that carry out the biological processes essential for the cell\u0092s functions and maintenance."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/translation"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcriptomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/non-coding-rnas"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nuclear-organization"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transposition"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-metabolism"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/post-translational-modifications"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/ribozymes"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcription"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteolysis"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/cell-division"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chromatin"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-recombination"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rna-metabolism"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/epigenetics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-replication"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-damage-and-repair"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/riboswitches"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/protein-folding"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/crispr-cas-systems"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chromosomes"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rnai"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Molecular biology"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/genomics", 
    "rdfs:label": "Genomics", 
    "sdDataset": "onto_subjects", 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/genetics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biotechnology"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Genomics is the study of the full genetic complement of an organism (the genome). It employs recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyse the structure and function of genomes."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/mobile-elements"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/genome-evolution"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/comparative-genomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/pharmacogenomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/metagenomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcriptomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/phylogenomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/epigenomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nutrigenomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/medical-genomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/genome-assembly-algorithms"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/conservation-genomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/personalized-medicine"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Genomics"
      }
    ], 
    "type": [
      "http://ns.nature.com/terms/Subject", 
      "http://www.w3.org/2004/02/skos/core#Concept"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://www.w3.org/2004/02/skos/core#Concept", 
    "rdfs:subClassOf": [
      {
        "id": "http://www.w3.org/2004/02/skos/core#Concept"
      }, 
      {
        "id": "http://www.w3.org/2000/01/rdf-schema#Resource"
      }
    ], 
    "sdDataset": "for_codes", 
    "type": [
      "http://www.w3.org/2000/01/rdf-schema#Resource", 
      "http://www.w3.org/2000/01/rdf-schema#Class"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "dcterms:description": [
      {
        "@language": "en", 
        "@value": "The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature."
      }
    ], 
    "dcterms:title": [
      {
        "@language": "en", 
        "@value": "Nature Subjects Taxonomy"
      }
    ], 
    "id": "http://scigraph.springernature.com/ontologies/subjects/", 
    "sdDataset": "onto_subjects", 
    "skos:hasTopConcept": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/physical-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/DEPRECATED"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/business-and-commerce"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/humanities"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/social-science"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/health-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/scientific-community-and-society"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/earth-and-environmental-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/subjects/transcriptomics'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/subjects/transcriptomics'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/subjects/transcriptomics'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/subjects/transcriptomics'


 

This table displays all metadata directly associated to this object as RDF triples.

100 TRIPLES      9 PREDICATES      25 URIs      18 LITERALS

Subject Predicate Object
1 sg:ontologies/subjects/transcriptomics sgo:license sg:explorer/license/
2 sgo:sdDataset onto_subjects
3 rdf:type npg:Subject
4 skos:Concept
5 rdfs:label Transcriptomics
6 skos:altLabel Gene Expression Monitoring
7 Gene Expression Monitorings
8 Gene Expression Pattern Analysis
9 Gene Expression Profile
10 Gene Expression Profiles
11 Gene Expression Profiling
12 Gene Expression Profilings
13 Gene Expression Signature
14 Gene Expression Signatures
15 Transcript Expression Analyses
16 Transcript Expression Analysis
17 Transcriptomes
18 mRNA Differential Display
19 mRNA Differential Displays
20 skos:broader sg:ontologies/subjects/genomics
21 sg:ontologies/subjects/molecular-biology
22 skos:definition Transcriptomics is the study of the transcriptome—the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell—using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the identification of genes that are differentially expressed in distinct cell populations, or in response to different treatments.
23 skos:inScheme sg:ontologies/subjects/
24 skos:prefLabel Transcriptomics
25 sg:ontologies/subjects/ dcterms:description The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
26 dcterms:title Nature Subjects Taxonomy
27 sgo:sdDataset onto_subjects
28 rdf:type skos:ConceptScheme
29 skos:hasTopConcept sg:ontologies/subjects/DEPRECATED
30 sg:ontologies/subjects/biological-sciences
31 sg:ontologies/subjects/business-and-commerce
32 sg:ontologies/subjects/earth-and-environmental-sciences
33 sg:ontologies/subjects/health-sciences
34 sg:ontologies/subjects/humanities
35 sg:ontologies/subjects/physical-sciences
36 sg:ontologies/subjects/scientific-community-and-society
37 sg:ontologies/subjects/social-science
38 sg:ontologies/subjects/genomics sgo:sdDataset onto_subjects
39 rdf:type npg:Subject
40 skos:Concept
41 rdfs:label Genomics
42 skos:broader sg:ontologies/subjects/biotechnology
43 sg:ontologies/subjects/genetics
44 skos:definition Genomics is the study of the full genetic complement of an organism (the genome). It employs recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyse the structure and function of genomes.
45 skos:inScheme sg:ontologies/subjects/
46 skos:narrower sg:ontologies/subjects/comparative-genomics
47 sg:ontologies/subjects/conservation-genomics
48 sg:ontologies/subjects/epigenomics
49 sg:ontologies/subjects/genome-assembly-algorithms
50 sg:ontologies/subjects/genome-evolution
51 sg:ontologies/subjects/medical-genomics
52 sg:ontologies/subjects/metagenomics
53 sg:ontologies/subjects/mobile-elements
54 sg:ontologies/subjects/nutrigenomics
55 sg:ontologies/subjects/personalized-medicine
56 sg:ontologies/subjects/pharmacogenomics
57 sg:ontologies/subjects/phylogenomics
58 sg:ontologies/subjects/transcriptomics
59 skos:prefLabel Genomics
60 sg:ontologies/subjects/molecular-biology sgo:sdDataset onto_subjects
61 rdf:type npg:Subject
62 skos:Concept
63 rdfs:label Molecular biology
64 skos:altLabel Biochemical Genetic
65 Biochemical Genetics
66 Molecular Genetic
67 Molecular Genetics
68 skos:broader sg:ontologies/subjects/biological-sciences
69 skos:definition Molecular Biology is the field of biology that studies the composition, structure and interactions of cellular molecules – such as nucleic acids and proteins – that carry out the biological processes essential for the cell’s functions and maintenance.
70 skos:inScheme sg:ontologies/subjects/
71 skos:narrower sg:ontologies/subjects/cell-division
72 sg:ontologies/subjects/chromatin
73 sg:ontologies/subjects/chromosomes
74 sg:ontologies/subjects/crispr-cas-systems
75 sg:ontologies/subjects/dna-damage-and-repair
76 sg:ontologies/subjects/dna-metabolism
77 sg:ontologies/subjects/dna-recombination
78 sg:ontologies/subjects/dna-replication
79 sg:ontologies/subjects/epigenetics
80 sg:ontologies/subjects/non-coding-rnas
81 sg:ontologies/subjects/nuclear-organization
82 sg:ontologies/subjects/post-translational-modifications
83 sg:ontologies/subjects/protein-folding
84 sg:ontologies/subjects/proteolysis
85 sg:ontologies/subjects/proteomics
86 sg:ontologies/subjects/riboswitches
87 sg:ontologies/subjects/ribozymes
88 sg:ontologies/subjects/rna-metabolism
89 sg:ontologies/subjects/rnai
90 sg:ontologies/subjects/single-molecule-biophysics
91 sg:ontologies/subjects/transcription
92 sg:ontologies/subjects/transcriptomics
93 sg:ontologies/subjects/translation
94 sg:ontologies/subjects/transposition
95 skos:prefLabel Molecular biology
96 skos:Concept sgo:sdDataset for_codes
97 rdf:type rdfs:Class
98 rdfs:Resource
99 rdfs:subClassOf rdfs:Resource
100 skos:Concept
 




Preview window. Press ESC to close (or click here)


...