Single-molecule biophysics


Ontology type: npg:Subject  | skos:Concept     


Concept Info

NAME

Single-molecule biophysics

DESCRIPTION

Single-molecule biophysics is the study of the dynamics and interactions of individual biomolecules to understand how they carry out their functions in living cells. For example, monitoring the folding properties of single protein or RNA molecules helps reveal how they are transported across cellular membranes.

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics", 
    "rdfs:label": "Single-molecule biophysics", 
    "sdDataset": "onto_subjects", 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/molecular-biology"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biophysics"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Single-molecule biophysics is the study of the dynamics and interactions of individual biomolecules to understand how they carry out their functions in living cells. For example, monitoring the folding properties of single protein or RNA molecules helps reveal how they are transported across cellular membranes."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Single-molecule biophysics"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/molecular-biology", 
    "rdfs:label": "Molecular biology", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Molecular Genetic"
      }, 
      {
        "@language": "en", 
        "@value": "Biochemical Genetic"
      }, 
      {
        "@language": "en", 
        "@value": "Molecular Genetics"
      }, 
      {
        "@language": "en", 
        "@value": "Biochemical Genetics"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Molecular Biology is the field of biology that studies the composition, structure and interactions of cellular molecules \u0096  such as nucleic acids and proteins \u0096 that carry out the biological processes essential for the cell\u0092s functions and maintenance."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/translation"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcriptomics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/non-coding-rnas"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nuclear-organization"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transposition"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-metabolism"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/post-translational-modifications"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/ribozymes"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcription"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteolysis"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/cell-division"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chromatin"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-recombination"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rna-metabolism"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/epigenetics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-replication"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-damage-and-repair"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/riboswitches"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/protein-folding"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/crispr-cas-systems"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chromosomes"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rnai"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Molecular biology"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/biophysics", 
    "rdfs:label": "Biophysics", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Physics of biology"
      }, 
      {
        "@language": "en", 
        "@value": "Biological physics"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Biophysics is the study of physical phenomena and physical processes in living things, on scales spanning molecules, cells, tissues and organisms. Biophysicists use the principles and methods of physics to understand biological systems. It is an interdisciplinary science, closely related to quantitative and systems biology."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/membrane-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/bioenergetics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/permeation-and-transport"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/computational-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/molecular-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/motility"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-fluorescence"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/intrinsically-disordered-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/exocytosis"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nanoscale-biophysics"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/endocytosis"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biopolymers-in-vivo"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/membrane-structure-and-assembly"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Biophysics"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://www.w3.org/2004/02/skos/core#Concept", 
    "rdfs:subClassOf": [
      {
        "id": "http://www.w3.org/2004/02/skos/core#Concept"
      }, 
      {
        "id": "http://www.w3.org/2000/01/rdf-schema#Resource"
      }
    ], 
    "sdDataset": "for_codes", 
    "type": [
      "http://www.w3.org/2000/01/rdf-schema#Resource", 
      "http://www.w3.org/2000/01/rdf-schema#Class"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "dcterms:description": [
      {
        "@language": "en", 
        "@value": "The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature."
      }
    ], 
    "dcterms:title": [
      {
        "@language": "en", 
        "@value": "Nature Subjects Taxonomy"
      }
    ], 
    "id": "http://scigraph.springernature.com/ontologies/subjects/", 
    "sdDataset": "onto_subjects", 
    "skos:hasTopConcept": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/physical-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/DEPRECATED"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/business-and-commerce"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/humanities"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/social-science"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/health-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/scientific-community-and-society"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/earth-and-environmental-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/subjects/single-molecule-biophysics'


 

This table displays all metadata directly associated to this object as RDF triples.

88 TRIPLES      8 PREDICATES      11 URIs      4 LITERALS

Subject Predicate Object
1 sg:ontologies/subjects/single-molecule-biophysics sgo:license sg:explorer/license/
2 sgo:sdDataset onto_subjects
3 rdf:type npg:Subject
4 skos:Concept
5 rdfs:label Single-molecule biophysics
6 skos:broader sg:ontologies/subjects/biophysics
7 sg:ontologies/subjects/molecular-biology
8 skos:definition Single-molecule biophysics is the study of the dynamics and interactions of individual biomolecules to understand how they carry out their functions in living cells. For example, monitoring the folding properties of single protein or RNA molecules helps reveal how they are transported across cellular membranes.
9 skos:inScheme sg:ontologies/subjects/
10 skos:prefLabel Single-molecule biophysics
11 sg:ontologies/subjects/ dcterms:description The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
12 dcterms:title Nature Subjects Taxonomy
13 sgo:sdDataset onto_subjects
14 rdf:type skos:ConceptScheme
15 skos:hasTopConcept sg:ontologies/subjects/DEPRECATED
16 sg:ontologies/subjects/biological-sciences
17 sg:ontologies/subjects/business-and-commerce
18 sg:ontologies/subjects/earth-and-environmental-sciences
19 sg:ontologies/subjects/health-sciences
20 sg:ontologies/subjects/humanities
21 sg:ontologies/subjects/physical-sciences
22 sg:ontologies/subjects/scientific-community-and-society
23 sg:ontologies/subjects/social-science
24 sg:ontologies/subjects/biophysics sgo:sdDataset onto_subjects
25 rdf:type npg:Subject
26 skos:Concept
27 rdfs:label Biophysics
28 skos:altLabel Biological physics
29 Physics of biology
30 skos:broader sg:ontologies/subjects/biological-sciences
31 skos:definition Biophysics is the study of physical phenomena and physical processes in living things, on scales spanning molecules, cells, tissues and organisms. Biophysicists use the principles and methods of physics to understand biological systems. It is an interdisciplinary science, closely related to quantitative and systems biology.
32 skos:inScheme sg:ontologies/subjects/
33 skos:narrower sg:ontologies/subjects/bioenergetics
34 sg:ontologies/subjects/biological-fluorescence
35 sg:ontologies/subjects/biopolymers-in-vivo
36 sg:ontologies/subjects/computational-biophysics
37 sg:ontologies/subjects/endocytosis
38 sg:ontologies/subjects/exocytosis
39 sg:ontologies/subjects/intrinsically-disordered-proteins
40 sg:ontologies/subjects/membrane-biophysics
41 sg:ontologies/subjects/membrane-structure-and-assembly
42 sg:ontologies/subjects/molecular-biophysics
43 sg:ontologies/subjects/motility
44 sg:ontologies/subjects/nanoscale-biophysics
45 sg:ontologies/subjects/permeation-and-transport
46 sg:ontologies/subjects/single-molecule-biophysics
47 skos:prefLabel Biophysics
48 sg:ontologies/subjects/molecular-biology sgo:sdDataset onto_subjects
49 rdf:type npg:Subject
50 skos:Concept
51 rdfs:label Molecular biology
52 skos:altLabel Biochemical Genetic
53 Biochemical Genetics
54 Molecular Genetic
55 Molecular Genetics
56 skos:broader sg:ontologies/subjects/biological-sciences
57 skos:definition Molecular Biology is the field of biology that studies the composition, structure and interactions of cellular molecules – such as nucleic acids and proteins – that carry out the biological processes essential for the cell’s functions and maintenance.
58 skos:inScheme sg:ontologies/subjects/
59 skos:narrower sg:ontologies/subjects/cell-division
60 sg:ontologies/subjects/chromatin
61 sg:ontologies/subjects/chromosomes
62 sg:ontologies/subjects/crispr-cas-systems
63 sg:ontologies/subjects/dna-damage-and-repair
64 sg:ontologies/subjects/dna-metabolism
65 sg:ontologies/subjects/dna-recombination
66 sg:ontologies/subjects/dna-replication
67 sg:ontologies/subjects/epigenetics
68 sg:ontologies/subjects/non-coding-rnas
69 sg:ontologies/subjects/nuclear-organization
70 sg:ontologies/subjects/post-translational-modifications
71 sg:ontologies/subjects/protein-folding
72 sg:ontologies/subjects/proteolysis
73 sg:ontologies/subjects/proteomics
74 sg:ontologies/subjects/riboswitches
75 sg:ontologies/subjects/ribozymes
76 sg:ontologies/subjects/rna-metabolism
77 sg:ontologies/subjects/rnai
78 sg:ontologies/subjects/single-molecule-biophysics
79 sg:ontologies/subjects/transcription
80 sg:ontologies/subjects/transcriptomics
81 sg:ontologies/subjects/translation
82 sg:ontologies/subjects/transposition
83 skos:prefLabel Molecular biology
84 skos:Concept sgo:sdDataset for_codes
85 rdf:type rdfs:Class
86 rdfs:Resource
87 rdfs:subClassOf rdfs:Resource
88 skos:Concept
 




Preview window. Press ESC to close (or click here)


...