Sequencing


Ontology type: npg:Subject  | skos:Concept     


Concept Info

NAME

Sequencing

DESCRIPTION

Sequencing refers to the techniques used to determine the primary structure of an unbranched biopolymer (DNA, RNA, protein, carbohydrate) resulting in a symbolic linear depiction of the monomeric subunits which summarizes much of the atomic-level structure of the molecule.

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Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/subjects/sequencing'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/subjects/sequencing'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/subjects/sequencing'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/subjects/sequencing'


 

This table displays all metadata directly associated to this object as RDF triples.

257 TRIPLES      10 PREDICATES      23 URIs      8 LITERALS

Subject Predicate Object
1 sg:ontologies/subjects/sequencing sgo:license sg:explorer/license/
2 sgo:sdDataset onto_subjects
3 rdf:type npg:Subject
4 skos:Concept
5 rdfs:label Sequencing
6 skos:altLabel Sequence Analyses
7 Sequence Analysis
8 Sequence Determination
9 Sequence Determinations
10 skos:broader sg:ontologies/subjects/biological-techniques
11 sg:ontologies/subjects/biotechnology
12 sg:ontologies/subjects/genetics
13 skos:definition Sequencing refers to the techniques used to determine the primary structure of an unbranched biopolymer (DNA, RNA, protein, carbohydrate) resulting in a symbolic linear depiction of the monomeric subunits which summarizes much of the atomic-level structure of the molecule.
14 skos:inScheme sg:ontologies/subjects/
15 skos:narrower sg:ontologies/subjects/dna-sequencing
16 sg:ontologies/subjects/next-generation-sequencing
17 sg:ontologies/subjects/polysaccharide-sequencing
18 sg:ontologies/subjects/protein-sequencing
19 sg:ontologies/subjects/rna-sequencing
20 sg:ontologies/subjects/sequence-annotation
21 sg:ontologies/subjects/targeted-resequencing
22 skos:prefLabel Sequencing
23 sg:ontologies/subjects/ dcterms:description The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
24 dcterms:title Nature Subjects Taxonomy
25 sgo:sdDataset onto_subjects
26 rdf:type skos:ConceptScheme
27 skos:hasTopConcept sg:ontologies/subjects/DEPRECATED
28 sg:ontologies/subjects/biological-sciences
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30 sg:ontologies/subjects/earth-and-environmental-sciences
31 sg:ontologies/subjects/health-sciences
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34 sg:ontologies/subjects/scientific-community-and-society
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36 sg:ontologies/subjects/biological-techniques sgo:sdDataset onto_subjects
37 rdf:type npg:Subject
38 skos:Concept
39 rdfs:label Biological techniques
40 skos:altLabel Methodological Studies
41 Methodological Study
42 Methods
43 Procedure
44 Procedures
45 skos:broader sg:ontologies/subjects/biological-sciences
46 skos:definition Biological techniques are methods or procedures that are used to study living things. They include experimental and computational methods, approaches, protocols and tools for biological research.
47 skos:inScheme sg:ontologies/subjects/
48 skos:narrower sg:ontologies/subjects/analytical-biochemistry
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62 sg:ontologies/subjects/high-throughput-screening
63 sg:ontologies/subjects/imaging
64 sg:ontologies/subjects/immunological-techniques
65 sg:ontologies/subjects/isolation-separation-purification
66 sg:ontologies/subjects/lab-on-a-chip
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80 skos:prefLabel Biological techniques
81 sg:ontologies/subjects/biotechnology sgo:sdDataset onto_subjects
82 rdf:type npg:Subject
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86 skos:broader sg:ontologies/subjects/biological-sciences
87 skos:definition Biotechnology is a broad discipline in which biological processes, organisms, cells or cellular components are exploited to develop new technologies. New tools and products developed by biotechnologists are useful in research, agriculture, industry and the clinic.
88 skos:inScheme sg:ontologies/subjects/
89 skos:narrower sg:ontologies/subjects/animal-biotechnology
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118 sg:ontologies/subjects/dna-sequencing sgo:sdDataset onto_subjects
119 rdf:type npg:Subject
120 skos:Concept
121 rdfs:label DNA sequencing
122 skos:altLabel DNA Sequence Analyses
123 DNA Sequence Analysis
124 DNA Sequence Determination
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126 skos:broader sg:ontologies/subjects/sequencing
127 skos:definition DNA sequencing is any chemical, enzymatic or technological procedure for determining the linear order of nucleotide bases in DNA. Sanger sequencing by replicative synthesis in the presence of dideoxy nucleotide chain terminator monomers has now given way to 'next generation' sequencing by short parallel read technologies. The term often applies to the entire sequence determination pipeline including post-sequencing software analysis.
128 skos:inScheme sg:ontologies/subjects/
129 skos:prefLabel DNA sequencing
130 sg:ontologies/subjects/genetics sgo:sdDataset onto_subjects
131 rdf:type npg:Subject
132 skos:Concept
133 rdfs:label Genetics
134 skos:broader sg:ontologies/subjects/biological-sciences
135 skos:definition Genetics is the branch of science concerned with genes, heredity, and variation in living organisms. It seeks to understand the process of trait inheritance from parents to offspring, including the molecular structure and function of genes, gene behaviour in the context of a cell or organism (e.g. dominance and epigenetics), gene distribution, and variation and change in populations.
136 skos:inScheme sg:ontologies/subjects/
137 skos:narrower sg:ontologies/subjects/agricultural-genetics
138 sg:ontologies/subjects/animal-breeding
139 sg:ontologies/subjects/behavioural-genetics
140 sg:ontologies/subjects/cancer-genetics
141 sg:ontologies/subjects/cancer-genomics
142 sg:ontologies/subjects/clinical-genetics
143 sg:ontologies/subjects/consanguinity
144 sg:ontologies/subjects/crispr-cas-systems
145 sg:ontologies/subjects/cytogenetics
146 sg:ontologies/subjects/development
147 sg:ontologies/subjects/epigenetics
148 sg:ontologies/subjects/epigenomics
149 sg:ontologies/subjects/eukaryote
150 sg:ontologies/subjects/evolutionary-biology
151 sg:ontologies/subjects/functional-genomics
152 sg:ontologies/subjects/gene-expression
153 sg:ontologies/subjects/gene-regulation
154 sg:ontologies/subjects/genetic-association-study
155 sg:ontologies/subjects/genetic-hybridization
156 sg:ontologies/subjects/genetic-interaction
157 sg:ontologies/subjects/genetic-linkage-study
158 sg:ontologies/subjects/genetic-markers
159 sg:ontologies/subjects/genome
160 sg:ontologies/subjects/genomic-instability
161 sg:ontologies/subjects/genomics
162 sg:ontologies/subjects/genotype
163 sg:ontologies/subjects/haplotypes
164 sg:ontologies/subjects/heritable-quantitative-trait
165 sg:ontologies/subjects/immunogenetics
166 sg:ontologies/subjects/inbreeding
167 sg:ontologies/subjects/medical-genetics
168 sg:ontologies/subjects/microbial-genetics
169 sg:ontologies/subjects/mutation
170 sg:ontologies/subjects/neurodevelopmental-disorders
171 sg:ontologies/subjects/plant-breeding
172 sg:ontologies/subjects/plant-genetics
173 sg:ontologies/subjects/polyploidy
174 sg:ontologies/subjects/population-genetics
175 sg:ontologies/subjects/prokaryote
176 sg:ontologies/subjects/quantitative-trait
177 sg:ontologies/subjects/rna-splicing
178 sg:ontologies/subjects/rnai
179 sg:ontologies/subjects/sequencing
180 skos:prefLabel Genetics
181 sg:ontologies/subjects/next-generation-sequencing sgo:sdDataset onto_subjects
182 rdf:type npg:Subject
183 skos:Concept
184 rdfs:label Next-generation sequencing
185 skos:broader sg:ontologies/subjects/sequencing
186 skos:definition Next-generation sequencing refers to non-Sanger-based high-throughput DNA sequencing technologies. Millions or billions of DNA strands can be sequenced in parallel, yielding substantially more throughput and minimizing the need for the fragment-cloning methods that are often used in Sanger sequencing of genomes.
187 skos:inScheme sg:ontologies/subjects/
188 skos:prefLabel Next-generation sequencing
189 sg:ontologies/subjects/polysaccharide-sequencing sgo:sdDataset onto_subjects
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193 skos:broader sg:ontologies/subjects/sequencing
194 skos:definition Polysaccharide sequencing refers to the determination of the sequence of polysaccharides. This is more complex than sequencing some other biopolymers as although many polysaccharides are linear, many also have branches. Additionally there are many monosaccharides which can each be bonded in different ways by different enzymes. Techniques for determining polysaccharide structures include NMR spectroscopy and methylation analysis.
195 skos:inScheme sg:ontologies/subjects/
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197 sg:ontologies/subjects/protein-sequencing sgo:sdDataset onto_subjects
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203 Amino Acid Sequence Determination
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206 Peptide Sequence Analyses
207 Peptide Sequence Analysis
208 Peptide Sequence Determination
209 Peptide Sequence Determinations
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214 skos:broader sg:ontologies/subjects/sequencing
215 skos:definition Protein sequencing refers to methods for determining the amino acid sequence of proteins (or peptides) and analysis of the sequence, for example to infer protein conformation. Techniques include mass spectrometry and the Edman degradation reaction as well as prediction of the protein sequence from the encoding DNA or mRNA sequence.
216 skos:inScheme sg:ontologies/subjects/
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227 skos:definition RNA sequencing refers to techniques used to determine the sequence of RNA molecules. It includes high-throughput shotgun sequencing of cDNA molecules obtained by reverse transcription from RNA, and next-generation sequencing technologies to sequence the RNA molecules within a biological sample in an effort to determine the primary sequence and relative abundance of each RNA molecule.
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240 skos:broader sg:ontologies/subjects/computational-biology-and-bioinformatics
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242 skos:definition Sequence annotation is the process of marking specific features in a DNA, RNA or protein sequence with descriptive information about structure or function.
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253 skos:Concept sgo:sdDataset for_codes
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