RNA sequencing


Ontology type: npg:Subject  | skos:Concept     


Concept Info

NAME

RNA sequencing

DESCRIPTION

RNA sequencing refers to techniques used to determine the sequence of RNA molecules. It includes high-throughput shotgun sequencing of cDNA molecules obtained by reverse transcription from RNA, and next-generation sequencing technologies to sequence the RNA molecules within a biological sample in an effort to determine the primary sequence and relative abundance of each RNA molecule.

Broader Concepts

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/rna-sequencing", 
    "rdfs:label": "RNA sequencing", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "RNA Sequence Determinations"
      }, 
      {
        "@language": "en", 
        "@value": "RNA Sequence Analysis"
      }, 
      {
        "@language": "en", 
        "@value": "RNA Sequence Analyses"
      }, 
      {
        "@language": "en", 
        "@value": "RNA Sequence Determination"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/sequencing"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "RNA sequencing refers to techniques used to determine the sequence of RNA molecules.  It includes high-throughput shotgun sequencing of cDNA molecules obtained by reverse transcription from RNA, and next-generation sequencing technologies to sequence the RNA molecules within a biological sample in an effort to determine the primary sequence and relative abundance of each RNA molecule."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "RNA sequencing"
      }
    ], 
    "type": [
      "http://ns.nature.com/terms/Subject", 
      "http://www.w3.org/2004/02/skos/core#Concept"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/sequencing", 
    "rdfs:label": "Sequencing", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Sequence Analyses"
      }, 
      {
        "@language": "en", 
        "@value": "Sequence Determination"
      }, 
      {
        "@language": "en", 
        "@value": "Sequence Analysis"
      }, 
      {
        "@language": "en", 
        "@value": "Sequence Determinations"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biotechnology"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-techniques"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/genetics"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Sequencing refers to the techniques used to determine the primary structure of an unbranched biopolymer (DNA, RNA, protein, carbohydrate) resulting in a symbolic linear depiction of the monomeric subunits which summarizes much of the atomic-level structure of the molecule."
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/protein-sequencing"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/sequence-annotation"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/targeted-resequencing"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/polysaccharide-sequencing"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/next-generation-sequencing"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-sequencing"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rna-sequencing"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Sequencing"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#Concept", 
      "http://ns.nature.com/terms/Subject"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://www.w3.org/2004/02/skos/core#Concept", 
    "rdfs:subClassOf": [
      {
        "id": "http://www.w3.org/2004/02/skos/core#Concept"
      }, 
      {
        "id": "http://www.w3.org/2000/01/rdf-schema#Resource"
      }
    ], 
    "sdDataset": "for_codes", 
    "type": [
      "http://www.w3.org/2000/01/rdf-schema#Resource", 
      "http://www.w3.org/2000/01/rdf-schema#Class"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "dcterms:description": [
      {
        "@language": "en", 
        "@value": "The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature."
      }
    ], 
    "dcterms:title": [
      {
        "@language": "en", 
        "@value": "Nature Subjects Taxonomy"
      }
    ], 
    "id": "http://scigraph.springernature.com/ontologies/subjects/", 
    "sdDataset": "onto_subjects", 
    "skos:hasTopConcept": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/physical-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/DEPRECATED"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/business-and-commerce"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/humanities"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/social-science"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/health-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/scientific-community-and-society"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/earth-and-environmental-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/subjects/rna-sequencing'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/subjects/rna-sequencing'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/subjects/rna-sequencing'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/subjects/rna-sequencing'


 

This table displays all metadata directly associated to this object as RDF triples.

52 TRIPLES      9 PREDICATES      14 URIs      8 LITERALS

Subject Predicate Object
1 sg:ontologies/subjects/rna-sequencing sgo:license sg:explorer/license/
2 sgo:sdDataset onto_subjects
3 rdf:type npg:Subject
4 skos:Concept
5 rdfs:label RNA sequencing
6 skos:altLabel RNA Sequence Analyses
7 RNA Sequence Analysis
8 RNA Sequence Determination
9 RNA Sequence Determinations
10 skos:broader sg:ontologies/subjects/sequencing
11 skos:definition RNA sequencing refers to techniques used to determine the sequence of RNA molecules. It includes high-throughput shotgun sequencing of cDNA molecules obtained by reverse transcription from RNA, and next-generation sequencing technologies to sequence the RNA molecules within a biological sample in an effort to determine the primary sequence and relative abundance of each RNA molecule.
12 skos:inScheme sg:ontologies/subjects/
13 skos:prefLabel RNA sequencing
14 sg:ontologies/subjects/ dcterms:description The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
15 dcterms:title Nature Subjects Taxonomy
16 sgo:sdDataset onto_subjects
17 rdf:type skos:ConceptScheme
18 skos:hasTopConcept sg:ontologies/subjects/DEPRECATED
19 sg:ontologies/subjects/biological-sciences
20 sg:ontologies/subjects/business-and-commerce
21 sg:ontologies/subjects/earth-and-environmental-sciences
22 sg:ontologies/subjects/health-sciences
23 sg:ontologies/subjects/humanities
24 sg:ontologies/subjects/physical-sciences
25 sg:ontologies/subjects/scientific-community-and-society
26 sg:ontologies/subjects/social-science
27 sg:ontologies/subjects/sequencing sgo:sdDataset onto_subjects
28 rdf:type npg:Subject
29 skos:Concept
30 rdfs:label Sequencing
31 skos:altLabel Sequence Analyses
32 Sequence Analysis
33 Sequence Determination
34 Sequence Determinations
35 skos:broader sg:ontologies/subjects/biological-techniques
36 sg:ontologies/subjects/biotechnology
37 sg:ontologies/subjects/genetics
38 skos:definition Sequencing refers to the techniques used to determine the primary structure of an unbranched biopolymer (DNA, RNA, protein, carbohydrate) resulting in a symbolic linear depiction of the monomeric subunits which summarizes much of the atomic-level structure of the molecule.
39 skos:inScheme sg:ontologies/subjects/
40 skos:narrower sg:ontologies/subjects/dna-sequencing
41 sg:ontologies/subjects/next-generation-sequencing
42 sg:ontologies/subjects/polysaccharide-sequencing
43 sg:ontologies/subjects/protein-sequencing
44 sg:ontologies/subjects/rna-sequencing
45 sg:ontologies/subjects/sequence-annotation
46 sg:ontologies/subjects/targeted-resequencing
47 skos:prefLabel Sequencing
48 skos:Concept sgo:sdDataset for_codes
49 rdf:type rdfs:Class
50 rdfs:Resource
51 rdfs:subClassOf rdfs:Resource
52 skos:Concept
 




Preview window. Press ESC to close (or click here)


...