Proteome


Ontology type: npg:Subject  | skos:Concept     


Concept Info

NAME

Proteome

DESCRIPTION

The proteome is the entire set of proteins produced by an organism or system and encoded by the full genome. A proteome may refer to the complement of proteins of a specific cell type (cellular proteome) or a subcellular system, as in a viral proteome or a nuclear proteome.

Broader Concepts

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/proteome", 
    "rdfs:label": "Proteome", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Proteomes"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteins"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "The proteome is the entire set of proteins produced by an organism or system and encoded by the full genome. A proteome may refer to the complement of proteins of a specific cell type (cellular proteome) or a subcellular system, as in a viral proteome or a nuclear proteome. "
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Proteome"
      }
    ], 
    "type": [
      "http://ns.nature.com/terms/Subject", 
      "http://www.w3.org/2004/02/skos/core#Concept"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://scigraph.springernature.com/ontologies/subjects/proteins", 
    "rdfs:label": "Proteins", 
    "sdDataset": "onto_subjects", 
    "skos:altLabel": [
      {
        "@language": "en", 
        "@value": "Protein Gene Products"
      }, 
      {
        "@language": "en", 
        "@value": "Gene Proteins"
      }, 
      {
        "@language": "en", 
        "@value": "Protein"
      }
    ], 
    "skos:broader": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biochemistry"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chemical-biology"
      }
    ], 
    "skos:definition": [
      {
        "@language": "en", 
        "@value": "Proteins are biopolymers of amino acids (polypeptides), joined by peptide bonds, that are generated by ribosomes. The amino acid sequence, encoded by its gene, determines a protein\u2019s structure and function. Newly synthesized proteins can be modified by post-translational modification, altering its protein folding, stability and activity. Proteins often associate into protein\u2013protein interaction networks for function. "
      }
    ], 
    "skos:inScheme": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/"
      }
    ], 
    "skos:narrower": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/scleroproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/cell-cycle-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/membrane-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/cytoskeletal-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/complement"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/rna-binding-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/ubiquitylated-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/cerebrospinal-fluid-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/gtp-binding-protein-regulators"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/ribosomal-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/selenium-binding-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/ubiquitins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/mitochondrial-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nucleotide-binding-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/dna-binding-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nucleases"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/tumour-suppressor-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nuclear-receptors"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/intracellular-signalling-peptides-and-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/proteome"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chromatin"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/lipoproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/g-protein-coupled-receptors"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/thioredoxins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/acetyltransferases"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/glycoproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/metalloproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/blood-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/nucleoproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/methylases"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/phosphoproteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/transcription-factors"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/chaperones"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/sumoylated-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/integrins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/carrier-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/colipases"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/contractile-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/circadian-rhythm-signalling-peptides-and-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/oncogene-proteins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/phosphorylases"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/lectins"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/viral-proteins"
      }
    ], 
    "skos:prefLabel": [
      {
        "@language": "en", 
        "@value": "Proteins"
      }
    ], 
    "type": [
      "http://ns.nature.com/terms/Subject", 
      "http://www.w3.org/2004/02/skos/core#Concept"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "id": "http://www.w3.org/2004/02/skos/core#Concept", 
    "rdfs:subClassOf": [
      {
        "id": "http://www.w3.org/2004/02/skos/core#Concept"
      }, 
      {
        "id": "http://www.w3.org/2000/01/rdf-schema#Resource"
      }
    ], 
    "sdDataset": "for_codes", 
    "type": [
      "http://www.w3.org/2000/01/rdf-schema#Resource", 
      "http://www.w3.org/2000/01/rdf-schema#Class"
    ]
  }, 
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "dcterms:description": [
      {
        "@language": "en", 
        "@value": "The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature."
      }
    ], 
    "dcterms:title": [
      {
        "@language": "en", 
        "@value": "Nature Subjects Taxonomy"
      }
    ], 
    "id": "http://scigraph.springernature.com/ontologies/subjects/", 
    "sdDataset": "onto_subjects", 
    "skos:hasTopConcept": [
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/physical-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/DEPRECATED"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/business-and-commerce"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/humanities"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/social-science"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/health-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/scientific-community-and-society"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/earth-and-environmental-sciences"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/subjects/biological-sciences"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/subjects/proteome'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/subjects/proteome'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/subjects/proteome'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/subjects/proteome'


 

This table displays all metadata directly associated to this object as RDF triples.

83 TRIPLES      9 PREDICATES      11 URIs      5 LITERALS

Subject Predicate Object
1 sg:ontologies/subjects/proteome sgo:license sg:explorer/license/
2 sgo:sdDataset onto_subjects
3 rdf:type npg:Subject
4 skos:Concept
5 rdfs:label Proteome
6 skos:altLabel Proteomes
7 skos:broader sg:ontologies/subjects/proteins
8 skos:definition The proteome is the entire set of proteins produced by an organism or system and encoded by the full genome. A proteome may refer to the complement of proteins of a specific cell type (cellular proteome) or a subcellular system, as in a viral proteome or a nuclear proteome.
9 skos:inScheme sg:ontologies/subjects/
10 skos:prefLabel Proteome
11 sg:ontologies/subjects/ dcterms:description The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
12 dcterms:title Nature Subjects Taxonomy
13 sgo:sdDataset onto_subjects
14 rdf:type skos:ConceptScheme
15 skos:hasTopConcept sg:ontologies/subjects/DEPRECATED
16 sg:ontologies/subjects/biological-sciences
17 sg:ontologies/subjects/business-and-commerce
18 sg:ontologies/subjects/earth-and-environmental-sciences
19 sg:ontologies/subjects/health-sciences
20 sg:ontologies/subjects/humanities
21 sg:ontologies/subjects/physical-sciences
22 sg:ontologies/subjects/scientific-community-and-society
23 sg:ontologies/subjects/social-science
24 sg:ontologies/subjects/proteins sgo:sdDataset onto_subjects
25 rdf:type npg:Subject
26 skos:Concept
27 rdfs:label Proteins
28 skos:altLabel Gene Proteins
29 Protein
30 Protein Gene Products
31 skos:broader sg:ontologies/subjects/biochemistry
32 sg:ontologies/subjects/chemical-biology
33 skos:definition Proteins are biopolymers of amino acids (polypeptides), joined by peptide bonds, that are generated by ribosomes. The amino acid sequence, encoded by its gene, determines a protein’s structure and function. Newly synthesized proteins can be modified by post-translational modification, altering its protein folding, stability and activity. Proteins often associate into protein–protein interaction networks for function.
34 skos:inScheme sg:ontologies/subjects/
35 skos:narrower sg:ontologies/subjects/acetyltransferases
36 sg:ontologies/subjects/blood-proteins
37 sg:ontologies/subjects/carrier-proteins
38 sg:ontologies/subjects/cell-cycle-proteins
39 sg:ontologies/subjects/cerebrospinal-fluid-proteins
40 sg:ontologies/subjects/chaperones
41 sg:ontologies/subjects/chromatin
42 sg:ontologies/subjects/circadian-rhythm-signalling-peptides-and-proteins
43 sg:ontologies/subjects/colipases
44 sg:ontologies/subjects/complement
45 sg:ontologies/subjects/contractile-proteins
46 sg:ontologies/subjects/cytoskeletal-proteins
47 sg:ontologies/subjects/dna-binding-proteins
48 sg:ontologies/subjects/g-protein-coupled-receptors
49 sg:ontologies/subjects/glycoproteins
50 sg:ontologies/subjects/gtp-binding-protein-regulators
51 sg:ontologies/subjects/integrins
52 sg:ontologies/subjects/intracellular-signalling-peptides-and-proteins
53 sg:ontologies/subjects/lectins
54 sg:ontologies/subjects/lipoproteins
55 sg:ontologies/subjects/membrane-proteins
56 sg:ontologies/subjects/metalloproteins
57 sg:ontologies/subjects/methylases
58 sg:ontologies/subjects/mitochondrial-proteins
59 sg:ontologies/subjects/nuclear-receptors
60 sg:ontologies/subjects/nucleases
61 sg:ontologies/subjects/nucleoproteins
62 sg:ontologies/subjects/nucleotide-binding-proteins
63 sg:ontologies/subjects/oncogene-proteins
64 sg:ontologies/subjects/phosphoproteins
65 sg:ontologies/subjects/phosphorylases
66 sg:ontologies/subjects/proteome
67 sg:ontologies/subjects/ribosomal-proteins
68 sg:ontologies/subjects/rna-binding-proteins
69 sg:ontologies/subjects/scleroproteins
70 sg:ontologies/subjects/selenium-binding-proteins
71 sg:ontologies/subjects/sumoylated-proteins
72 sg:ontologies/subjects/thioredoxins
73 sg:ontologies/subjects/transcription-factors
74 sg:ontologies/subjects/tumour-suppressor-proteins
75 sg:ontologies/subjects/ubiquitins
76 sg:ontologies/subjects/ubiquitylated-proteins
77 sg:ontologies/subjects/viral-proteins
78 skos:prefLabel Proteins
79 skos:Concept sgo:sdDataset for_codes
80 rdf:type rdfs:Class
81 rdfs:Resource
82 rdfs:subClassOf rdfs:Resource
83 skos:Concept
 




Preview window. Press ESC to close (or click here)


...