Database of Genomic Variants Archive View Homepage


Ontology type: skos:Concept     


Concept Info

NAME

Database of Genomic Variants Archive

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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/163"
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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/32"
      }, 
      {
        "id": "http://scigraph.springernature.com/ontologies/data-repositories/19"
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      {
        "id": "http://scigraph.springernature.com/ontologies/data-repositories/96"
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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/43"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/data-repositories/20'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/data-repositories/20'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/data-repositories/20'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/data-repositories/20'


 

This table displays all metadata directly associated to this object as RDF triples.

166 TRIPLES      11 PREDICATES      13 URIs      4 LITERALS

Subject Predicate Object
1 sg:ontologies/data-repositories/20 schema:about sg:ontologies/subjects/dna-sequencing
2 sg:ontologies/subjects/next-generation-sequencing
3 sg:ontologies/subjects/rna-sequencing
4 schema:sameAs http://www.biosharing.org/biodbcore-000628
5 schema:url http://www.ebi.ac.uk/dgva
6 sgo:license sg:explorer/license/
7 sgo:sdDataset onto_dr
8 rdf:type skos:Concept
9 rdfs:label Database of Genomic Variants Archive
10 skos:altLabel DGVa
11 skos:inScheme sg:ontologies/data-repositories/
12 skos:prefLabel Database of Genomic Variants Archive
13 skos:topConceptOf sg:ontologies/data-repositories/
14 sg:ontologies/data-repositories/ dcterms:description The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.
15 dcterms:title Data Repositories Taxonomy
16 sgo:sdDataset onto_dr
17 rdf:type skos:ConceptScheme
18 owl:versionInfo 0.0.5
19 skos:hasTopConcept sg:ontologies/data-repositories/1
20 sg:ontologies/data-repositories/10
21 sg:ontologies/data-repositories/100
22 sg:ontologies/data-repositories/101
23 sg:ontologies/data-repositories/105
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61 sg:ontologies/data-repositories/151
62 sg:ontologies/data-repositories/152
63 sg:ontologies/data-repositories/153
64 sg:ontologies/data-repositories/154
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66 sg:ontologies/data-repositories/156
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70 sg:ontologies/data-repositories/16
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81 sg:ontologies/data-repositories/25
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128 sg:ontologies/data-repositories/96
129 sg:ontologies/data-repositories/97
130 sg:ontologies/subjects/dna-sequencing sgo:sdDataset onto_subjects
131 rdf:type npg:Subject
132 skos:Concept
133 rdfs:label DNA sequencing
134 skos:altLabel DNA Sequence Analyses
135 DNA Sequence Analysis
136 DNA Sequence Determination
137 DNA Sequence Determinations
138 skos:broader sg:ontologies/subjects/sequencing
139 skos:definition DNA sequencing is any chemical, enzymatic or technological procedure for determining the linear order of nucleotide bases in DNA. Sanger sequencing by replicative synthesis in the presence of dideoxy nucleotide chain terminator monomers has now given way to 'next generation' sequencing by short parallel read technologies. The term often applies to the entire sequence determination pipeline including post-sequencing software analysis.
140 skos:inScheme sg:ontologies/subjects/
141 skos:prefLabel DNA sequencing
142 sg:ontologies/subjects/next-generation-sequencing sgo:sdDataset onto_subjects
143 rdf:type npg:Subject
144 skos:Concept
145 rdfs:label Next-generation sequencing
146 skos:broader sg:ontologies/subjects/sequencing
147 skos:definition Next-generation sequencing refers to non-Sanger-based high-throughput DNA sequencing technologies. Millions or billions of DNA strands can be sequenced in parallel, yielding substantially more throughput and minimizing the need for the fragment-cloning methods that are often used in Sanger sequencing of genomes.
148 skos:inScheme sg:ontologies/subjects/
149 skos:prefLabel Next-generation sequencing
150 sg:ontologies/subjects/rna-sequencing sgo:sdDataset onto_subjects
151 rdf:type npg:Subject
152 skos:Concept
153 rdfs:label RNA sequencing
154 skos:altLabel RNA Sequence Analyses
155 RNA Sequence Analysis
156 RNA Sequence Determination
157 RNA Sequence Determinations
158 skos:broader sg:ontologies/subjects/sequencing
159 skos:definition RNA sequencing refers to techniques used to determine the sequence of RNA molecules. It includes high-throughput shotgun sequencing of cDNA molecules obtained by reverse transcription from RNA, and next-generation sequencing technologies to sequence the RNA molecules within a biological sample in an effort to determine the primary sequence and relative abundance of each RNA molecule.
160 skos:inScheme sg:ontologies/subjects/
161 skos:prefLabel RNA sequencing
162 skos:Concept sgo:sdDataset for_codes
163 rdf:type rdfs:Class
164 rdfs:Resource
165 rdfs:subClassOf rdfs:Resource
166 skos:Concept
 




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