NCBI Assembly View Homepage


Ontology type: skos:Concept     


Concept Info

NAME

NCBI Assembly

DESCRIPTION

Genome assembly organization and additional information.

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/163"
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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/32"
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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/96"
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        "id": "http://scigraph.springernature.com/ontologies/data-repositories/43"
      }
    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/data-repositories/145'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/data-repositories/145'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/data-repositories/145'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/data-repositories/145'


 

This table displays all metadata directly associated to this object as RDF triples.

152 TRIPLES      10 PREDICATES      11 URIs      4 LITERALS

Subject Predicate Object
1 sg:ontologies/data-repositories/145 schema:about sg:ontologies/subjects/dna-sequencing
2 sg:ontologies/subjects/next-generation-sequencing
3 schema:url http://www.ncbi.nlm.nih.gov/assembly
4 sgo:license sg:explorer/license/
5 sgo:sdDataset onto_dr
6 rdf:type skos:Concept
7 rdfs:label NCBI Assembly
8 skos:definition Genome assembly organization and additional information.
9 skos:inScheme sg:ontologies/data-repositories/
10 skos:prefLabel NCBI Assembly
11 skos:topConceptOf sg:ontologies/data-repositories/
12 sg:ontologies/data-repositories/ dcterms:description The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.
13 dcterms:title Data Repositories Taxonomy
14 sgo:sdDataset onto_dr
15 rdf:type skos:ConceptScheme
16 owl:versionInfo 0.0.5
17 skos:hasTopConcept sg:ontologies/data-repositories/1
18 sg:ontologies/data-repositories/10
19 sg:ontologies/data-repositories/100
20 sg:ontologies/data-repositories/101
21 sg:ontologies/data-repositories/105
22 sg:ontologies/data-repositories/107
23 sg:ontologies/data-repositories/108
24 sg:ontologies/data-repositories/109
25 sg:ontologies/data-repositories/11
26 sg:ontologies/data-repositories/111
27 sg:ontologies/data-repositories/112
28 sg:ontologies/data-repositories/113
29 sg:ontologies/data-repositories/115
30 sg:ontologies/data-repositories/119
31 sg:ontologies/data-repositories/124
32 sg:ontologies/data-repositories/125
33 sg:ontologies/data-repositories/127
34 sg:ontologies/data-repositories/128
35 sg:ontologies/data-repositories/129
36 sg:ontologies/data-repositories/13
37 sg:ontologies/data-repositories/130
38 sg:ontologies/data-repositories/131
39 sg:ontologies/data-repositories/132
40 sg:ontologies/data-repositories/133
41 sg:ontologies/data-repositories/134
42 sg:ontologies/data-repositories/136
43 sg:ontologies/data-repositories/137
44 sg:ontologies/data-repositories/138
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46 sg:ontologies/data-repositories/14
47 sg:ontologies/data-repositories/140
48 sg:ontologies/data-repositories/141
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50 sg:ontologies/data-repositories/143
51 sg:ontologies/data-repositories/144
52 sg:ontologies/data-repositories/145
53 sg:ontologies/data-repositories/146
54 sg:ontologies/data-repositories/147
55 sg:ontologies/data-repositories/148
56 sg:ontologies/data-repositories/149
57 sg:ontologies/data-repositories/15
58 sg:ontologies/data-repositories/150
59 sg:ontologies/data-repositories/151
60 sg:ontologies/data-repositories/152
61 sg:ontologies/data-repositories/153
62 sg:ontologies/data-repositories/154
63 sg:ontologies/data-repositories/155
64 sg:ontologies/data-repositories/156
65 sg:ontologies/data-repositories/157
66 sg:ontologies/data-repositories/158
67 sg:ontologies/data-repositories/159
68 sg:ontologies/data-repositories/16
69 sg:ontologies/data-repositories/160
70 sg:ontologies/data-repositories/161
71 sg:ontologies/data-repositories/162
72 sg:ontologies/data-repositories/163
73 sg:ontologies/data-repositories/164
74 sg:ontologies/data-repositories/17
75 sg:ontologies/data-repositories/19
76 sg:ontologies/data-repositories/20
77 sg:ontologies/data-repositories/21
78 sg:ontologies/data-repositories/24
79 sg:ontologies/data-repositories/25
80 sg:ontologies/data-repositories/26
81 sg:ontologies/data-repositories/28
82 sg:ontologies/data-repositories/30
83 sg:ontologies/data-repositories/31
84 sg:ontologies/data-repositories/32
85 sg:ontologies/data-repositories/33
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87 sg:ontologies/data-repositories/39
88 sg:ontologies/data-repositories/4
89 sg:ontologies/data-repositories/40
90 sg:ontologies/data-repositories/41
91 sg:ontologies/data-repositories/42
92 sg:ontologies/data-repositories/43
93 sg:ontologies/data-repositories/44
94 sg:ontologies/data-repositories/45
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96 sg:ontologies/data-repositories/47
97 sg:ontologies/data-repositories/49
98 sg:ontologies/data-repositories/5
99 sg:ontologies/data-repositories/51
100 sg:ontologies/data-repositories/52
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102 sg:ontologies/data-repositories/56
103 sg:ontologies/data-repositories/6
104 sg:ontologies/data-repositories/63
105 sg:ontologies/data-repositories/66
106 sg:ontologies/data-repositories/69
107 sg:ontologies/data-repositories/7
108 sg:ontologies/data-repositories/71
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110 sg:ontologies/data-repositories/74
111 sg:ontologies/data-repositories/75
112 sg:ontologies/data-repositories/76
113 sg:ontologies/data-repositories/77
114 sg:ontologies/data-repositories/78
115 sg:ontologies/data-repositories/80
116 sg:ontologies/data-repositories/81
117 sg:ontologies/data-repositories/82
118 sg:ontologies/data-repositories/83
119 sg:ontologies/data-repositories/86
120 sg:ontologies/data-repositories/88
121 sg:ontologies/data-repositories/89
122 sg:ontologies/data-repositories/9
123 sg:ontologies/data-repositories/90
124 sg:ontologies/data-repositories/92
125 sg:ontologies/data-repositories/94
126 sg:ontologies/data-repositories/96
127 sg:ontologies/data-repositories/97
128 sg:ontologies/subjects/dna-sequencing sgo:sdDataset onto_subjects
129 rdf:type npg:Subject
130 skos:Concept
131 rdfs:label DNA sequencing
132 skos:altLabel DNA Sequence Analyses
133 DNA Sequence Analysis
134 DNA Sequence Determination
135 DNA Sequence Determinations
136 skos:broader sg:ontologies/subjects/sequencing
137 skos:definition DNA sequencing is any chemical, enzymatic or technological procedure for determining the linear order of nucleotide bases in DNA. Sanger sequencing by replicative synthesis in the presence of dideoxy nucleotide chain terminator monomers has now given way to 'next generation' sequencing by short parallel read technologies. The term often applies to the entire sequence determination pipeline including post-sequencing software analysis.
138 skos:inScheme sg:ontologies/subjects/
139 skos:prefLabel DNA sequencing
140 sg:ontologies/subjects/next-generation-sequencing sgo:sdDataset onto_subjects
141 rdf:type npg:Subject
142 skos:Concept
143 rdfs:label Next-generation sequencing
144 skos:broader sg:ontologies/subjects/sequencing
145 skos:definition Next-generation sequencing refers to non-Sanger-based high-throughput DNA sequencing technologies. Millions or billions of DNA strands can be sequenced in parallel, yielding substantially more throughput and minimizing the need for the fragment-cloning methods that are often used in Sanger sequencing of genomes.
146 skos:inScheme sg:ontologies/subjects/
147 skos:prefLabel Next-generation sequencing
148 skos:Concept sgo:sdDataset for_codes
149 rdf:type rdfs:Class
150 rdfs:Resource
151 rdfs:subClassOf rdfs:Resource
152 skos:Concept
 




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