Japanese Genotype-phenotype Archive View Homepage


Ontology type: skos:Concept     


Concept Info

NAME

Japanese Genotype-phenotype Archive

DESCRIPTION

The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.

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    ], 
    "type": [
      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
    ]
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/data-repositories/143'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/data-repositories/143'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/data-repositories/143'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/data-repositories/143'


 

This table displays all metadata directly associated to this object as RDF triples.

183 TRIPLES      11 PREDICATES      13 URIs      5 LITERALS

Subject Predicate Object
1 sg:ontologies/data-repositories/143 schema:about sg:ontologies/subjects/genomics
2 sg:ontologies/subjects/metabolomics
3 sg:ontologies/subjects/proteomics
4 schema:url http://trace.ddbj.nig.ac.jp/jga/index_e.html
5 sgo:license sg:explorer/license/
6 sgo:sdDataset onto_dr
7 rdf:type skos:Concept
8 rdfs:label Japanese Genotype-phenotype Archive
9 skos:altLabel JGA
10 skos:definition The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.
11 skos:inScheme sg:ontologies/data-repositories/
12 skos:prefLabel Japanese Genotype-phenotype Archive
13 skos:topConceptOf sg:ontologies/data-repositories/
14 sg:ontologies/data-repositories/ dcterms:description The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.
15 dcterms:title Data Repositories Taxonomy
16 sgo:sdDataset onto_dr
17 rdf:type skos:ConceptScheme
18 owl:versionInfo 0.0.5
19 skos:hasTopConcept sg:ontologies/data-repositories/1
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130 sg:ontologies/subjects/genomics sgo:sdDataset onto_subjects
131 rdf:type npg:Subject
132 skos:Concept
133 rdfs:label Genomics
134 skos:broader sg:ontologies/subjects/biotechnology
135 sg:ontologies/subjects/genetics
136 skos:definition Genomics is the study of the full genetic complement of an organism (the genome). It employs recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyse the structure and function of genomes.
137 skos:inScheme sg:ontologies/subjects/
138 skos:narrower sg:ontologies/subjects/comparative-genomics
139 sg:ontologies/subjects/conservation-genomics
140 sg:ontologies/subjects/epigenomics
141 sg:ontologies/subjects/genome-assembly-algorithms
142 sg:ontologies/subjects/genome-evolution
143 sg:ontologies/subjects/medical-genomics
144 sg:ontologies/subjects/metagenomics
145 sg:ontologies/subjects/mobile-elements
146 sg:ontologies/subjects/nutrigenomics
147 sg:ontologies/subjects/personalized-medicine
148 sg:ontologies/subjects/pharmacogenomics
149 sg:ontologies/subjects/phylogenomics
150 sg:ontologies/subjects/transcriptomics
151 skos:prefLabel Genomics
152 sg:ontologies/subjects/metabolomics sgo:sdDataset onto_subjects
153 rdf:type npg:Subject
154 skos:Concept
155 rdfs:label Metabolomics
156 skos:altLabel Metabolomic
157 Metabonomic
158 Metabonomics
159 skos:broader sg:ontologies/subjects/biochemistry
160 sg:ontologies/subjects/biological-techniques
161 sg:ontologies/subjects/biotechnology
162 sg:ontologies/subjects/chemical-biology
163 sg:ontologies/subjects/metabolism
164 skos:definition Metabolomics refers to the systematic identification and quantification of the small molecule metabolic products (the metabolome) of a biological system (cell, tissue, organ, biological fluid, or organism) at a specific point in time. Mass spectrometry and NMR spectroscopy are the techniques most often used for metabolome profiling.
165 skos:inScheme sg:ontologies/subjects/
166 skos:prefLabel Metabolomics
167 sg:ontologies/subjects/proteomics sgo:sdDataset onto_subjects
168 rdf:type npg:Subject
169 skos:Concept
170 rdfs:label Proteomics
171 skos:broader sg:ontologies/subjects/biochemistry
172 sg:ontologies/subjects/biotechnology
173 sg:ontologies/subjects/chemical-biology
174 sg:ontologies/subjects/molecular-biology
175 skos:definition Proteomics refers to the study of proteomes, but is also used to describe the techniques used to determine the entire set of proteins of an organism or system, such as protein purification and mass spectrometry.
176 skos:inScheme sg:ontologies/subjects/
177 skos:narrower sg:ontologies/subjects/protein-protein-interaction-networks
178 skos:prefLabel Proteomics
179 skos:Concept sgo:sdDataset for_codes
180 rdf:type rdfs:Class
181 rdfs:Resource
182 rdfs:subClassOf rdfs:Resource
183 skos:Concept
 




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