EMDataBank View Homepage


Ontology type: skos:Concept     


Concept Info

NAME

EMDataBank

DESCRIPTION

The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

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      "http://www.w3.org/2004/02/skos/core#ConceptScheme"
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]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/data-repositories/139'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/data-repositories/139'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/data-repositories/139'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/data-repositories/139'


 

This table displays all metadata directly associated to this object as RDF triples.

169 TRIPLES      11 PREDICATES      13 URIs      5 LITERALS

Subject Predicate Object
1 sg:ontologies/data-repositories/139 schema:about sg:ontologies/subjects/electron-microscopy
2 sg:ontologies/subjects/tomography
3 sg:ontologies/subjects/x-ray-crystallography
4 schema:url http://www.emdatabank.org/
5 sgo:license sg:explorer/license/
6 sgo:sdDataset onto_dr
7 rdf:type skos:Concept
8 rdfs:label EMDataBank
9 skos:altLabel EMDB
10 skos:definition The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.
11 skos:inScheme sg:ontologies/data-repositories/
12 skos:prefLabel EMDataBank
13 skos:topConceptOf sg:ontologies/data-repositories/
14 sg:ontologies/data-repositories/ dcterms:description The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.
15 dcterms:title Data Repositories Taxonomy
16 sgo:sdDataset onto_dr
17 rdf:type skos:ConceptScheme
18 owl:versionInfo 0.0.5
19 skos:hasTopConcept sg:ontologies/data-repositories/1
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130 sg:ontologies/subjects/electron-microscopy sgo:sdDataset onto_subjects
131 rdf:type npg:Subject
132 skos:Concept
133 rdfs:label Electron microscopy
134 skos:broader sg:ontologies/subjects/structural-biology
135 sg:ontologies/subjects/structure-determination
136 skos:definition Electron microscopy uses a beam of electrons to illuminate a sample and achieve much higher spatial resolution than light microscopy. Transmission electron microscopy generates an image of the internal structure of a thin sample. Scanning electron microscopy generates a topological image of a sample.
137 skos:inScheme sg:ontologies/subjects/
138 skos:narrower sg:ontologies/subjects/cryoelectron-microscopy
139 sg:ontologies/subjects/cryoelectron-tomography
140 skos:prefLabel Electron microscopy
141 sg:ontologies/subjects/tomography sgo:sdDataset onto_subjects
142 rdf:type npg:Subject
143 skos:Concept
144 rdfs:label Tomography
145 skos:altLabel Tomographies
146 skos:broader sg:ontologies/subjects/medical-imaging
147 skos:definition Tomography is a technique whereby the body is imaged in 'slices' or sections. Typically the imaging modality is X-ray radiography, and the slices can be viewed separately or in combination.
148 skos:inScheme sg:ontologies/subjects/
149 skos:narrower sg:ontologies/subjects/computed-tomography
150 sg:ontologies/subjects/positron-emission-tomography
151 skos:prefLabel Tomography
152 sg:ontologies/subjects/x-ray-crystallography sgo:sdDataset onto_subjects
153 rdf:type npg:Subject
154 skos:Concept
155 rdfs:label X-ray crystallography
156 skos:altLabel X Ray Crystallographies
157 X Ray Crystallography
158 Xray Crystallography
159 skos:broader sg:ontologies/subjects/structural-biology
160 sg:ontologies/subjects/structure-determination
161 skos:definition X-ray crystallography is a technique that uses X-ray diffraction patterns to determine high-resolution, three-dimensional structures of molecules such as proteins, small organic molecules, and materials. The substance of interest must be in crystalline form, which typically requires testing various crystallization conditions.
162 skos:inScheme sg:ontologies/subjects/
163 skos:narrower sg:ontologies/subjects/nanocrystallography
164 skos:prefLabel X-ray crystallography
165 skos:Concept sgo:sdDataset for_codes
166 rdf:type rdfs:Class
167 rdfs:Resource
168 rdfs:subClassOf rdfs:Resource
169 skos:Concept
 




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