Data Repositories Taxonomy


Ontology type: skos:ConceptScheme     


Taxonomy Info

NAME

Data Repositories Taxonomy

DESCRIPTION

The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.

Top Concepts

  • Functional Connectomes Project International Neuroimaging Data-Sharing Initiative
  • Biological Magnetic Resonance Data Bank
  • Pride Archive
  • Protein Circular Dichroism Data Bank
  • Ncbi Pubchem Bioassay
  • Rat Genome Database
  • Reaction Database Standard Search Interface
  • Research Domain Criteria Database
  • Biomodels
  • Sage Bionetworks
  • Seanoe
  • Simbad Astronomical Database
  • Spectra
  • The European Genome-Phenome Archive
  • Uk Data Service - Reshare
  • Uk Solar System Data Centre
  • Uniprotkb
  • University Of Strathclyde Pure
  • Vectorbase
  • The Cancer Imaging Archive
  • Sicas Medical Image Repository
  • World Data Center For Climate At Dkrz
  • Worldwide Protein Data Bank
  • Xenbase
  • Zebrafish Model Organism Database
  • Aekos - Tern Ecoinformatics
  • Beilstein-Institut, Strenda
  • Cananolab
  • Emdatabank
  • Chembl
  • Environmental Data Initiative
  • European Nucleotide Archive
  • Immport
  • Japanese Genotype-Phenotype Archive
  • Morphobank.Org
  • Ncbi Assembly
  • Ncbi Pubchem Substance
  • Unavco, Inc.
  • Zenodo
  • Neurodata
  • Climate Hazards Group
  • 4tu.Centre For Research Data
  • Swedish National Data Service
  • U.S. Geological Survey
  • Lsdb Archive
  • University Of Dundee
  • Cirad Dataverse
  • Lund University
  • University Of Reading
  • G-Node
  • Structural Biology Data Grid
  • Clinicaltrials.Gov
  • Knb: The Knowledge Network For Biocomplexity
  • Cern Open Data Portal
  • Cefas Laboratory, Uk
  • Institute For Marine And Antarctic Studies, University Of Tasmania
  • London School Of Hygiene & Tropical Medicine
  • Coherent X-Ray Imaging Data Bank
  • Crystallography Open Database
  • Database Of Genomic Variants Archive
  • Database Of Interacting Proteins
  • Dbgap
  • Dbsnp
  • Dbvar
  • Dna Databank Of Japan
  • Dryad Digital Repository
  • Earthchem
  • Ebi Metagenomics
  • Embl Nucleotide Sequence Database
  • Eukaryotic Pathogen Database Resources
  • European Variation Archive
  • Archaeology Data Service
  • Figshare
  • Flowrepository
  • Flybase
  • Genbank
  • Gene Expression Omnibus
  • Genomernai
  • The Global Biodiversity Information Facility
  • Harvard Dataverse
  • Influenza Research Database
  • Arrayexpress
  • Intact
  • Integrated Taxonomic Information System
  • Ipk Gatersleben
  • Kinetic Models Of Biological Systems
  • Australian Antarctic Data Centre
  • Marine Geosciences Data System
  • Metabolights
  • Mouse Genome Informatics
  • Australian Ocean Data Network
  • Nasa Goddard Earth Sciences Data And Information Services Center
  • National Addiction & Hiv Data Archive Program
  • National Database For Autism Research
  • National Database For Clinical Trials Related To Mental Illness
  • Ncbi Sequence Read Archive
  • Ncbi Taxonomy
  • Ncbi Trace Archive
  • Nerc Data Centres
  • Neuromorpho.Org
  • Noaa National Centers For Environmental Information
  • Nomad Repository
  • Oak Ridge National Laboratory Distributed Active Archive Center
  • Open Science Framework
  • Openfmri
  • Biological General Repository For Interaction Datasets
  • Openicpsr
  • Oregon State University Libraries
  • Pangaea
  • Peptideatlas
  • Physionet
  • JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

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        "sdDataset": "onto_dr", 
        "skos:definition": [
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        ], 
        "type": [
          "http://www.w3.org/2004/02/skos/core#Concept"
        ]
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/ontologies/data-repositories/'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/ontologies/data-repositories/'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/ontologies/data-repositories/'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/ontologies/data-repositories/'


     

    This table displays all metadata directly associated to this object as RDF triples.

    1286 TRIPLES      7 PREDICATES      118 URIs      4 LITERALS

    Subject Predicate Object
    1 sg:ontologies/data-repositories/ dcterms:description The Data Repositories taxonomy is a categorization of research data repositories that have been evaluated by the Scientific Data team as being suitable for archiving research data in conjunction with a Springer Nature publication.
    2 dcterms:title Data Repositories Taxonomy
    3 sgo:license sg:explorer/license/
    4 sgo:sdDataset onto_dr
    5 rdf:type skos:ConceptScheme
    6 owl:versionInfo 0.0.5
    7 skos:hasTopConcept sg:ontologies/data-repositories/1
    8 sg:ontologies/data-repositories/10
    9 sg:ontologies/data-repositories/100
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    121 sgo:sdDataset onto_dr
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    125 skos:definition Database for open data sharing of resting-state fMRI and DTI images collected from over 50 sites around the world. These data collections now contain comprehensive phentoypic information, openly available via data usage agreements.
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    127 skos:prefLabel Functional Connectomes Project International Neuroimaging Data-Sharing Initiative
    128 skos:topConceptOf sg:ontologies/data-repositories/
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    132 schema:url http://www.bmrb.wisc.edu/
    133 sgo:sdDataset onto_dr
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    135 rdfs:label Biological Magnetic Resonance Data Bank
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    137 skos:definition BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.
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    144 schema:sameAs http://www.biosharing.org/biodbcore-000325
    145 schema:url http://www.ebi.ac.uk/pride/
    146 sgo:sdDataset onto_dr
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    148 rdfs:label PRIDE Archive
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    151 skos:prefLabel PRIDE Archive
    152 skos:topConceptOf sg:ontologies/data-repositories/
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    155 schema:sameAs http://www.biosharing.org/biodbcore-000613
    156 schema:url http://pcddb.cryst.bbk.ac.uk/home.php
    157 sgo:sdDataset onto_dr
    158 rdf:type skos:Concept
    159 rdfs:label Protein Circular Dichroism Data Bank
    160 skos:altLabel PCDDB
    161 skos:inScheme sg:ontologies/data-repositories/
    162 skos:prefLabel Protein Circular Dichroism Data Bank
    163 skos:topConceptOf sg:ontologies/data-repositories/
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    165 schema:sameAs http://www.biosharing.org/biodbcore-000455
    166 schema:url http://pubchem.ncbi.nlm.nih.gov/
    167 sgo:sdDataset onto_dr
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    169 rdfs:label NCBI PubChem BioAssay
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    171 skos:prefLabel NCBI PubChem BioAssay
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    174 schema:sameAs http://www.biosharing.org/biodbcore-000417
    175 schema:url http://rgd.mcw.edu/
    176 sgo:sdDataset onto_dr
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    178 rdfs:label Rat Genome Database
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    181 skos:prefLabel Rat Genome Database
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    206 skos:definition BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.
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    215 skos:prefLabel Sage Bionetworks
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